Gene
| Gene Model ID | pfu_aug2.0_47.1_23332 |
|---|---|
| Locus | scaffold47.1 : 426563 ... 441079 : + |
| To GenomeBrowser | scaffold47.1:426563..441079 |
| Genes list of scaffold | scaffold47.1 |
| Synonym | pfu_aug1.0_630.1_50955 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| poly -binding protein 3 | GO:0005634 GO:0005829 GO:0016071 GO:0044822 GO:0070062 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_47.1_23332.t4 | 3 | 1 | KH_1 | 13 | 73 | 0.0 | 173.2 | 6.3e-19 | 1.9e-15 | 56.2 |
| pfu_aug2.0_47.1_23332.t4 | 3 | 1 | KH_4 | 13 | 35 | 1.1e-07 | 31.3 | 6.0e-05 | 0.18 | 11.4 |
| pfu_aug2.0_47.1_23332.t4 | 3 | 1 | KH_2 | 15 | 46 | 1.1e-14 | 53.7 | 7.7e-07 | 0.0023 | 17.4 |
| pfu_aug2.0_47.1_23332.t4 | 3 | 1 | KH_3 | 23 | 61 | 4.39999e-40 | 134.6 | 1.3e-15 | 3.9e-12 | 45.5 |
| pfu_aug2.0_47.1_23332.t4 | 3 | 2 | KH_4 | 93 | 117 | 1.1e-07 | 31.3 | 0.004 | 12.0 | 5.6 |
| pfu_aug2.0_47.1_23332.t4 | 3 | 2 | KH_1 | 95 | 155 | 0.0 | 173.2 | 8.5e-21 | 2.5e-17 | 62.2 |
| pfu_aug2.0_47.1_23332.t4 | 3 | 2 | KH_2 | 96 | 128 | 1.1e-14 | 53.7 | 2.1e-08 | 6.2e-05 | 22.4 |
| pfu_aug2.0_47.1_23332.t4 | 3 | 2 | KH_3 | 104 | 146 | 4.39999e-40 | 134.6 | 7.1e-18 | 2.1e-14 | 52.7 |
| pfu_aug2.0_47.1_23332.t4 | 3 | 3 | KH_4 | 283 | 317 | 1.1e-07 | 31.3 | 6.4e-05 | 0.19 | 11.3 |
| pfu_aug2.0_47.1_23332.t4 | 3 | 3 | KH_1 | 285 | 347 | 0.0 | 173.2 | 3.4e-21 | 1.0e-17 | 63.5 |
| pfu_aug2.0_47.1_23332.t4 | 3 | 3 | KH_3 | 295 | 335 | 4.39999e-40 | 134.6 | 1.5e-15 | 4.5e-12 | 45.3 |
| pfu_aug2.0_47.1_23332.t4 | 3 | 3 | KH_2 | 295 | 317 | 1.1e-14 | 53.7 | 3.0e-06 | 0.0089 | 15.5 |
Transcript
| Transcript ID | pfu_aug2.0_47.1_23332.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_47.1_23332.t1 atggtactgaacgacggagctccaagcagtatgttaacggtccgaatgattatgcaaggaaaggaggttgggagtataat aggaaagaaaggagataatataaagagattcagagaggatagcggtgctaaaataaacatatctgacggttcgtgtccag agcgtattgtaactgtgacggggtcaacagaatgtatacataaagctttcacaatgatctgtaaaaagtttgaagaagtc aatgacttgcagaacacgccttccgtgcctaaacctcccgtcacacttcgtttggttgtgccagcgagtcaatgtgggtc actcataggtaaaggaggatccaagatcaaggaaatcagagaaaccacgggtgcttccatacaagtggcgtcagaaatgt taccgaactcaacggaacgcgcggtgacagtgtccggcacggcagacgccattacaatgtgcatacagaatatctgtaac ataatgttagagtcgccacccaaaggggccacaattcaataccgtccaaaacctgtagttccacccgttatcttcgccgg gggtcaggcttacacagttcaaggtcaaattcctgggattcccccagctgagcagaaagagagaattgcaattcccaaag ttgagttgtccaagttacatcaattgaccctcggacaccaggccattcccttaatacctacttcaccccagattatccaa gcagtacctggcatgccaccaatggcggcttacccacggccaaatgcagcagccattccagcggctccccagcaacagca gccgccgcagcaacaaaccaccacagaaatggcgatccctaatgacctcatcgggtgcatcataggtagaggtggacaga aaattaatgagataagacaaatgtcaggtgcggtgataaaaatagcgaatgccgaagaaggggcgcctgaccgcaaagta acgattacgggtactccagagacgataagcatggcacaatacctgataaatactaggtgcgtatatccccaacaagtgta ttactactaa |
|
| Transcript ID | pfu_aug2.0_47.1_23332.t2 |
| Definition | - |
>pfu_aug2.0_47.1_23332.t2 atggtactgaacgacggagctccaagcagtatgttaacggtccgaatgattatgcaaggaaaggaggttgggagtataat aggaaagaaaggagataatataaagagattcagagaggatagcggtgctaaaataaacatatctgacggttcgtgtccag agcgtattgtaactgtgacggggtcaacagaatgtatacataaagctttcacaatgatctgtaaaaagtttgaagaagtc aatgacttgcagaacacgccttccgtgcctaaacctcccgtcacacttcgtttggttgtgccagcgagtcaatgtgggtc actcataggtaaaggaggatccaagatcaaggaaatcagagaaaccacgggtgcttccatacaagtggcgtcagaaatgt taccgaactcaacggaacgcgcggtgacagtgtccggcacggcagacgccattacaatgtgcatacagaatatctgtaac ataatgttagagtcgccacccaaaggggccacaattcaataccgtccaaaacctgtagttccacccgttatcttcgccgg gggtcaggcttacacagttcaaggtcaaattcctgggattcccccagctgaggtttggtctccacccaaggagcaaccta taatgttgtccaagttacatcaattgaccctcggacaccaggccattcccttaatacctacttcaccccagattatccaa gcagtacctggcatgccaccaatggcggcttacccacggccaaatgcagcagccattccagcggctccccagcaacagca gccgccgcagcaacaaaccaccacagaaatggcgatccctaatgacctcatcgggtgcatcataggtagaggtggacaga aaattaatgagataagacaaatgtcaggtgcggtgataaaaatagcgaatgccgaagaaggggcgcctgaccgcaaagta acgattacgggtactccagagacgataagcatggcacaatacctgataaatactaggtgcgtatatccccaacaagtgta ttactactaa |
|
| Transcript ID | pfu_aug2.0_47.1_23332.t3 |
| Definition | - |
>pfu_aug2.0_47.1_23332.t3 atggtactgaacgacggagctccaagcagtatgttaacggtccgaatgattatgcaaggaaaggaggttgggagtataat aggaaagaaaggagataatataaagagattcagagaggatagcggtgctaaaataaacatatctgacggttcgtgtccag agcgtattgtaactgtgacggggtcaacagaatgtatacataaagctttcacaatgatctgtaaaaagtttgaagaagtc aatgacttgcagaacacgccttccgtgcctaaacctcccgtcacacttcgtttggttgtgccagcgagtcaatgtgggtc actcataggtaaaggaggatccaagatcaaggaaatcagagaaaccacgggtgcttccatacaagtggcgtcagaaatgt taccgaactcaacggaacgcgcggtgacagtgtccggcacggcagacgccattacaatgtgcatacagaatatctgtaac ataatgttagagtcgccacccaaaggggccacaattcaataccgtccaaaacctgtagttccacccgttatcttcgccgg gggtcaggcttacacagttcaaggtcaaattcctgggattcccccagctgagaaagagagaattgcaattcccaaagttg aggtttggtctccacccaaggagcaacctataatgttgtccaagttacatcaattgaccctcggacaccaggccattccc ttaatacctacttcaccccagattatccaagcagtacctggcatgccaccaatggcggcttacccacggccaaatgcagc agccattccagcggctccccagcaacagcagccgccgcagcaacaaaccaccacagaaatggcgatccctaatgacctca tcgggtgcatcataggtagaggtggacagaaaattaatgagataagacaaatgtcaggtgcggtgataaaaatagcgaat gccgaagaaggggcgcctgaccgcaaagtaacgattacgggtactccagagacgataagcatggcacaatacctgataaa tactaggtgcgtatatccccaacaagtgtattactactaa |
|
| Transcript ID | pfu_aug2.0_47.1_23332.t4 |
| Definition | - |
>pfu_aug2.0_47.1_23332.t4 atggtactgaacgacggagctccaagcagtatgttaacggtccgaatgattatgcaaggaaaggaggttgggagtataat aggaaagaaaggagataatataaagagattcagagaggatagcggtgctaaaataaacatatctgacggttcgtgtccag agcgtattgtaactgtgacggggtcaacagaatgtatacataaagctttcacaatgatctgtaaaaagtttgaagaagtc aatgacttgcagaacacgccttccgtgcctaaacctcccgtcacacttcgtttggttgtgccagcgagtcaatgtgggtc actcataggtaaaggaggatccaagatcaaggaaatcagagaaaccacgggtgcttccatacaagtggcgtcagaaatgt taccgaactcaacggaacgcgcggtgacagtgtccggcacggcagacgccattacaatgtgcatacagaatatctgtaac ataatgttagagtcgccacccaaaggggccacaattcaataccgtccaaaacctgtagttccacccgttatcttcgccgg gggtcaggcttacacagttcaaggtcaaattcctgggattcccccagctgagcagaaagagagaattgcaattcccaaag ttgaggtttggtctccacccaaggagcaacctataatgttgtccaagttacatcaattgaccctcggacaccaggccatt cccttaatacctacttcaccccagattatccaagcagtacctggcatgccaccaatggcggcttacccacggccaaatgc agcagccattccagcggctccccagcaacagcagccgccgcagcaacaaaccaccacagaaatggcgatccctaatgacc tcatcgggtgcatcataggtagaggtggacagaaaattaatgagataagacaaatgtcaggtgcggtgataaaaatagcg aatgccgaagaaggggcgcctgaccgcaaagtaacgattacgggtactccagagacgataagcatggcacaatacctgat aaatactaggtgcgtatatccccaacaagtgtattactactaa |
|
Protein
| Protein ID | pfu_aug2.0_47.1_23332.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_47.1_23332.t1 MVLNDGAPSSMLTVRMIMQGKEVGSIIGKKGDNIKRFREDSGAKINISDGSCPERIVTVTGSTECIHKAFTMICKKFEEV NDLQNTPSVPKPPVTLRLVVPASQCGSLIGKGGSKIKEIRETTGASIQVASEMLPNSTERAVTVSGTADAITMCIQNICN IMLESPPKGATIQYRPKPVVPPVIFAGGQAYTVQGQIPGIPPAEQKERIAIPKVELSKLHQLTLGHQAIPLIPTSPQIIQ AVPGMPPMAAYPRPNAAAIPAAPQQQQPPQQQTTTEMAIPNDLIGCIIGRGGQKINEIRQMSGAVIKIANAEEGAPDRKV TITGTPETISMAQYLINTRCVYPQQVYYY |
|
| Protein ID | pfu_aug2.0_47.1_23332.t2 |
| Definition | - |
>pfu_aug2.0_47.1_23332.t2 MVLNDGAPSSMLTVRMIMQGKEVGSIIGKKGDNIKRFREDSGAKINISDGSCPERIVTVTGSTECIHKAFTMICKKFEEV NDLQNTPSVPKPPVTLRLVVPASQCGSLIGKGGSKIKEIRETTGASIQVASEMLPNSTERAVTVSGTADAITMCIQNICN IMLESPPKGATIQYRPKPVVPPVIFAGGQAYTVQGQIPGIPPAEVWSPPKEQPIMLSKLHQLTLGHQAIPLIPTSPQIIQ AVPGMPPMAAYPRPNAAAIPAAPQQQQPPQQQTTTEMAIPNDLIGCIIGRGGQKINEIRQMSGAVIKIANAEEGAPDRKV TITGTPETISMAQYLINTRCVYPQQVYYY |
|
| Protein ID | pfu_aug2.0_47.1_23332.t3 |
| Definition | - |
>pfu_aug2.0_47.1_23332.t3 MVLNDGAPSSMLTVRMIMQGKEVGSIIGKKGDNIKRFREDSGAKINISDGSCPERIVTVTGSTECIHKAFTMICKKFEEV NDLQNTPSVPKPPVTLRLVVPASQCGSLIGKGGSKIKEIRETTGASIQVASEMLPNSTERAVTVSGTADAITMCIQNICN IMLESPPKGATIQYRPKPVVPPVIFAGGQAYTVQGQIPGIPPAEKERIAIPKVEVWSPPKEQPIMLSKLHQLTLGHQAIP LIPTSPQIIQAVPGMPPMAAYPRPNAAAIPAAPQQQQPPQQQTTTEMAIPNDLIGCIIGRGGQKINEIRQMSGAVIKIAN AEEGAPDRKVTITGTPETISMAQYLINTRCVYPQQVYYY |
|
| Protein ID | pfu_aug2.0_47.1_23332.t4 |
| Definition | - |
>pfu_aug2.0_47.1_23332.t4 MVLNDGAPSSMLTVRMIMQGKEVGSIIGKKGDNIKRFREDSGAKINISDGSCPERIVTVTGSTECIHKAFTMICKKFEEV NDLQNTPSVPKPPVTLRLVVPASQCGSLIGKGGSKIKEIRETTGASIQVASEMLPNSTERAVTVSGTADAITMCIQNICN IMLESPPKGATIQYRPKPVVPPVIFAGGQAYTVQGQIPGIPPAEQKERIAIPKVEVWSPPKEQPIMLSKLHQLTLGHQAI PLIPTSPQIIQAVPGMPPMAAYPRPNAAAIPAAPQQQQPPQQQTTTEMAIPNDLIGCIIGRGGQKINEIRQMSGAVIKIA NAEEGAPDRKVTITGTPETISMAQYLINTRCVYPQQVYYY |
|