Gene
| Gene Model ID | pfu_aug2.0_470.1_00784 |
|---|---|
| Locus | scaffold470.1 : 49716 ... 87108 : + |
| To GenomeBrowser | scaffold470.1:49716..87108 |
| Genes list of scaffold | scaffold470.1 |
| Synonym | pfu_aug1.0_13615.1_61238 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_470.1_00784.t1 | 2 | 1 | LRR_8 | 67 | 105 | 6.8e-13 | 48.1 | 2.2e-08 | 4.0e-05 | 23.2 |
| pfu_aug2.0_470.1_00784.t1 | 5 | 1 | LRR_4 | 71 | 113 | 5.8e-20 | 70.4 | 3.8e-12 | 7.1e-09 | 35.0 |
| pfu_aug2.0_470.1_00784.t1 | 4 | 1 | LRR_1 | 72 | 92 | 4.6e-11 | 41.1 | 0.00045 | 0.84 | 9.9 |
| pfu_aug2.0_470.1_00784.t1 | 1 | 1 | LRR_9 | 75 | 223 | 3.3e-16 | 59.3 | 6.0e-19 | 1.1e-15 | 57.6 |
| pfu_aug2.0_470.1_00784.t1 | 4 | 2 | LRR_1 | 94 | 114 | 4.6e-11 | 41.1 | 2.7e-05 | 0.05 | 13.6 |
| pfu_aug2.0_470.1_00784.t1 | 5 | 2 | LRR_4 | 115 | 159 | 5.8e-20 | 70.4 | 8.9e-12 | 1.6e-08 | 33.9 |
| pfu_aug2.0_470.1_00784.t1 | 2 | 2 | LRR_8 | 116 | 174 | 6.8e-13 | 48.1 | 2.8e-10 | 5.2e-07 | 29.3 |
| pfu_aug2.0_470.1_00784.t1 | 4 | 3 | LRR_1 | 117 | 133 | 4.6e-11 | 41.1 | 0.00019 | 0.35 | 11.0 |
| pfu_aug2.0_470.1_00784.t1 | 5 | 3 | LRR_4 | 141 | 178 | 5.8e-20 | 70.4 | 1.0e-08 | 1.9e-05 | 24.1 |
| pfu_aug2.0_470.1_00784.t1 | 4 | 4 | LRR_1 | 141 | 160 | 4.6e-11 | 41.1 | 0.00091 | 1.7 | 8.9 |
| pfu_aug2.0_470.1_00784.t1 | 5 | 4 | LRR_4 | 166 | 197 | 5.8e-20 | 70.4 | 0.046 | 84.0 | 2.9 |
| pfu_aug2.0_470.1_00784.t1 | 5 | 5 | LRR_4 | 847 | 857 | 5.8e-20 | 70.4 | 1.4 | 2600.0 | -1.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_470.1_00784.t1 | gi|564253628|ref|XP_006265814.1| | PREDICTED: centriolin [Alligator mississippiensis] | 0.0 |
| pfu_aug2.0_470.1_00784.t1 | gi|557262867|ref|XP_006016945.1| | PREDICTED: centriolin [Alligator sinensis] | 0.0 |
| pfu_aug2.0_470.1_00784.t1 | gi|641765369|ref|XP_008167684.1| | PREDICTED: centriolin isoform X4 [Chrysemys picta bellii] | 0.0 |
| pfu_aug2.0_470.1_00784.t1 | gi|697003525|ref|XP_009567938.1| | PREDICTED: centriolin [Cuculus canorus] | 0.0 |
| pfu_aug2.0_470.1_00784.t1 | gi|543372178|ref|XP_005529310.1| | PREDICTED: LOW QUALITY PROTEIN: centriolin [Pseudopodoces humilis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_470.1_00784.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_470.1_00784.t1 atggatgaattcgaaggatggtcagcatgttctatactgctgttgatatatgcattttcagcaagactttcatttttcct cttccagcgcaaaggtatagagaaagtcgggtatagtgtaaataggagggctatatccccaggagacgagcacaggaggg gtttatctgtccccagggatgaagagtacattgaaaatctggatcgcctgaagagactgcaagtgctgaatctaagttca aacatgatagaaaagattgagaagttagaaaaactcctcaagctaagggagctaaatctgtcgtataataatatttcaaa aatcgagggacttgaaaatctaacttatttgcaagtgctaaacctgacggggaattacatagaacacattcctgtgtgga tggggaaaagacttaaggcactacgtacattacacctgggaagaaacaacctgcaatctttgagtgagttggccaagtta aagccattaccagatctgacacagctgacaatagctgagaaccctgtagctggtctacctcactgccgactttacctggt gtttcacctgagaaccttagaggtcctggatagtcagcctgtaacagagagagatagacaaggtgccagggagaggtttg aacaagaggaagttgaaaggcttgaaaagaaagtagaacaagatgactcgagattacgtaagcttgaggaagagaagaat ttgtccgctcaggaatcctcattcctcaaagcgaaggaagaggagtatctacggcaacagaggatgtccatggaacgtat gcaggaaatggaaagggagctcaccacgaaggatgatttgctcaagaagaagactcaggagttaaacaaggcatgtgaga aacattatcagctagaacaagaactagccttttataagatagactccaagtttgatagcttaggaaaaagtccaggatcc ttccatcaggatgcagatgacagtggaggactaggtgagagtccgtacctagggcgggccaggttcaaggccaatcagtt tgcccgggagggcgatctatctggctcacctcaacaacacggagtttatcataacgtgactcagagtccacaacgagctg aagtcatgagtaagcttaactcacaactcgacgaagaactcgctgtcaagcaagaccgagtacagaaaactgaggaccgt ttaaagcggcttacagatgatctcatgggaacagagaggaagttgctacaagcaacgaaggatctgaaacgtatgggtga catcaccgacaaagacgatgttaaagttcagcttcgacaaagactggccaagaaaatgcaattggtcaatgagttacgag acagtgctacccagatcgaggaagaaatcgacaagactcgtagttccatgcatcagaataaaatggacgtgtccagaatt aagggccagctggagagacttgatcctaaagatcctaaatacaaacgtttgtatgctgagatggtagataaagaacaaca gatcagtgagagtaatcagatgtatggacaactacaacaacaactagaagtcatgttagataccatcgccagggaaacag acgacataaaaaaactggaacaacagctgaatgatgatcgagtagagagtaacgagtctctacgccaggagctggatgat attgtaggagggttacagggctacctggccagtgtcaaacagaaaggtctgaagtcacagagagactttgagagtttgtt aggagagaaggcgtcgctagaggagaaagtacgatctctggaacaggagcttagcgtactggatagtgaagctggcagag ctcatagtatggaaatgcgtgtaaaagaactggaggacaccatatctagacaacaggaccataacagaactttagaggac cagattaacaagtcccgggccaaagacgtggagtaccaggaccgcatggagagtacatcacacgagctacaggccatgaa aagtgcacttagggacaccgaacgtaaagtacagaatgagaagatgactttagaaagacaagtacagacagagagggaga aggcacagcaagctatgagagacgccaaggccaaatctgctctggaggacgaggtcagaaggttacaaggtcaaattgaa ggtcaaaagcaacaaattgaggaggagagacggaagttgaacgagtccatacctcaacatgatctgaagagaagactgag agaattgtcacaaaatgttaaagctggcaggagtccaatcagtccacagagtgacagagattttgtcggtaaaactttcc gagacctgcagcagtacattaatgatagtatgaacaagagtatgaatgacatggaacagatcaaacatacgaccagccag gcaaatgctgaaattcagacgttacgtgaaaacttacaacgagctgaggacaaactacataaacaggagaagaaggagaa aaataaagaaagcaagatggaggcagagaggaaggctgtatcagacgaactgagaaaacgtgacaatgagatacagaaac ttaaggcgctactgaaggaggaacaaaataaggcagctcagaactacaagaaaggaggggatgtcaaacaacattcggtt gcagcacccacagcaaaacctcaagacacccaatgctaa |
|
Protein
| Protein ID | pfu_aug2.0_470.1_00784.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_470.1_00784.t1 MDEFEGWSACSILLLIYAFSARLSFFLFQRKGIEKVGYSVNRRAISPGDEHRRGLSVPRDEEYIENLDRLKRLQVLNLSS NMIEKIEKLEKLLKLRELNLSYNNISKIEGLENLTYLQVLNLTGNYIEHIPVWMGKRLKALRTLHLGRNNLQSLSELAKL KPLPDLTQLTIAENPVAGLPHCRLYLVFHLRTLEVLDSQPVTERDRQGARERFEQEEVERLEKKVEQDDSRLRKLEEEKN LSAQESSFLKAKEEEYLRQQRMSMERMQEMERELTTKDDLLKKKTQELNKACEKHYQLEQELAFYKIDSKFDSLGKSPGS FHQDADDSGGLGESPYLGRARFKANQFAREGDLSGSPQQHGVYHNVTQSPQRAEVMSKLNSQLDEELAVKQDRVQKTEDR LKRLTDDLMGTERKLLQATKDLKRMGDITDKDDVKVQLRQRLAKKMQLVNELRDSATQIEEEIDKTRSSMHQNKMDVSRI KGQLERLDPKDPKYKRLYAEMVDKEQQISESNQMYGQLQQQLEVMLDTIARETDDIKKLEQQLNDDRVESNESLRQELDD IVGGLQGYLASVKQKGLKSQRDFESLLGEKASLEEKVRSLEQELSVLDSEAGRAHSMEMRVKELEDTISRQQDHNRTLED QINKSRAKDVEYQDRMESTSHELQAMKSALRDTERKVQNEKMTLERQVQTEREKAQQAMRDAKAKSALEDEVRRLQGQIE GQKQQIEEERRKLNESIPQHDLKRRLRELSQNVKAGRSPISPQSDRDFVGKTFRDLQQYINDSMNKSMNDMEQIKHTTSQ ANAEIQTLRENLQRAEDKLHKQEKKEKNKESKMEAERKAVSDELRKRDNEIQKLKALLKEEQNKAAQNYKKGGDVKQHSV AAPTAKPQDTQC |
|