Gene
| Gene Model ID | pfu_aug2.0_470.1_00789 |
|---|---|
| Locus | scaffold470.1 : 161476 ... 167874 : + |
| To GenomeBrowser | scaffold470.1:161476..167874 |
| Genes list of scaffold | scaffold470.1 |
| Synonym | pfu_aug1.0_24481.1_11623 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_470.1_00789.t1 | 2 | 1 | zf-B_box | 13 | 47 | 1.1e-06 | 28.4 | 3.7e-10 | 1.1e-06 | 28.4 |
| pfu_aug2.0_470.1_00789.t1 | 2 | 2 | zf-B_box | 412 | 422 | 1.1e-06 | 28.4 | 1.2 | 3500.0 | -2.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_470.1_00789.t1 | gi|260818172|ref|XP_002603958.1| | hypothetical protein BRAFLDRAFT_71754 [Branchiostoma floridae] | 4.0e-12 |
| pfu_aug2.0_470.1_00789.t1 | gi|291230141|ref|XP_002735026.1| | PREDICTED: tripartite motif-containing protein 2-like [Saccoglossus kowalevskii] | 5.0e-10 |
| pfu_aug2.0_470.1_00789.t1 | gi|676454424|ref|XP_009053676.1| | hypothetical protein LOTGIDRAFT_88081, partial [Lottia gigantea] | 6.0e-10 |
| pfu_aug2.0_470.1_00789.t1 | gi|348524478|ref|XP_003449750.1| | PREDICTED: tripartite motif-containing protein 2-like isoform X1 [Oreochromis niloticus] | 2.0e-09 |
| pfu_aug2.0_470.1_00789.t1 | gi|657582326|ref|XP_008295217.1| | PREDICTED: tripartite motif-containing protein 2 [Stegastes partitus] | 2.0e-09 |
Transcript
| Transcript ID | pfu_aug2.0_470.1_00789.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_470.1_00789.t1 atggcttcagatactactccctaccaattagctgttccaatgtgcaaacatcatcccaacgaggaattagactcgtactg ctttatgtgcaaattgaggatttgtgaggaatgctgccgtggtgagcacaaggatcacaactggaggagttcaaagaaag ccgccagagaaatcagggaaaactcacgtgctagatgtgacaaaatagaaggtatgattagtggactggaacataaggaa gaggatagagagacagaggacgatatagagaggatagataagttaaagatggagtttaaatccttcatagatgacatggc ggaggagatgaaggcaaagaggagaagacaaaggtcacaaagaaacttgacaaaagaactagagaaactgaggaaaatgc tcaacttctacaagaatgaggtcaaattagtaaaggacaatgtcattcttgaggtcgaagaagaacttcacattctacag aaaaacatctcgtcattatcaatacaatcggggaagaaggaactaaagtttaaagaaggcaaattatccccagatgccct tcagtatatgtttggtgacgtcgtggaagataaatcagagtcaaaggtgatgaccacagaaaaatcccatttcatccatg ttgatgattcagctcctataataaatatcgtcccagtaacatgcaatgagacattagtacgtagatcaggcagtacccaa atagaccatgtaaacatgacagggagggtgatccaggagacgaagctacctactgcctgctctgatttcatcatgatgga taatgatatcatctacactgtgtttggtgacaagatgatccgccgtatatcctcctcaggtacagtgagtgacgtcatct ccacagctcctctacatcctgttggtatcagtacatcacgtgacggcggtatccttgtcaccctgtgtgactgttcttac aaagatataacaacatcaagtaaaggagagatattacaaattaccagcaagggagggatcacacagaggtacggacacac agagggacatacagatagagtattagtaaatcctgacagagtagcacagaacgtcaatatggacctctgtgtagttgacg tcatagataaggagtccagaacccgacttgtggtgttatctataaaaggacatcgtaaattcagttacacagggcagtca tcactcaaggagaagttttcagcagatgacatagtttgtgatcgccatgggaggatactggtgacggattgctacaacca cactgttcacctctttagtgagaacggtcacttcctgaagctgatactgacagaacagagtcctctccaatggccgagat gtctgggtctacacggtgatacactgtgggtggggtgtgagaaaggtgtggtcagagcgtacaaatacaacgagaatacc tattaa |
|
Protein
| Protein ID | pfu_aug2.0_470.1_00789.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_470.1_00789.t1 MASDTTPYQLAVPMCKHHPNEELDSYCFMCKLRICEECCRGEHKDHNWRSSKKAAREIRENSRARCDKIEGMISGLEHKE EDRETEDDIERIDKLKMEFKSFIDDMAEEMKAKRRRQRSQRNLTKELEKLRKMLNFYKNEVKLVKDNVILEVEEELHILQ KNISSLSIQSGKKELKFKEGKLSPDALQYMFGDVVEDKSESKVMTTEKSHFIHVDDSAPIINIVPVTCNETLVRRSGSTQ IDHVNMTGRVIQETKLPTACSDFIMMDNDIIYTVFGDKMIRRISSSGTVSDVISTAPLHPVGISTSRDGGILVTLCDCSY KDITTSSKGEILQITSKGGITQRYGHTEGHTDRVLVNPDRVAQNVNMDLCVVDVIDKESRTRLVVLSIKGHRKFSYTGQS SLKEKFSADDIVCDRHGRILVTDCYNHTVHLFSENGHFLKLILTEQSPLQWPRCLGLHGDTLWVGCEKGVVRAYKYNENT Y |
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