Gene
| Gene Model ID | pfu_aug2.0_470.1_00795 |
|---|---|
| Locus | scaffold470.1 : 274782 ... 294830 : - |
| To GenomeBrowser | scaffold470.1:274782..294830 |
| Genes list of scaffold | scaffold470.1 |
| Synonym | pfu_aug1.0_3608.1_37643 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_470.1_00795.t1 | 4 | 1 | Nebulin | 17 | 44 | 2.9e-30 | 102.4 | 1.8e-08 | 5.2e-05 | 22.6 |
| pfu_aug2.0_470.1_00795.t1 | 4 | 2 | Nebulin | 52 | 80 | 2.9e-30 | 102.4 | 4.5e-11 | 1.3e-07 | 30.8 |
| pfu_aug2.0_470.1_00795.t1 | 4 | 3 | Nebulin | 88 | 116 | 2.9e-30 | 102.4 | 3.1e-10 | 9.3e-07 | 28.1 |
| pfu_aug2.0_470.1_00795.t1 | 4 | 4 | Nebulin | 123 | 144 | 2.9e-30 | 102.4 | 6.8e-08 | 0.0002 | 20.7 |
| pfu_aug2.0_470.1_00795.t1 | 1 | 1 | SH3_2 | 322 | 375 | 3.4e-06 | 26.4 | 2.6e-09 | 7.6e-06 | 25.3 |
| pfu_aug2.0_470.1_00795.t1 | 1 | 1 | SH3_1 | 323 | 370 | 2.2e-11 | 42.9 | 1.4e-14 | 4.0e-11 | 42.1 |
| pfu_aug2.0_470.1_00795.t1 | 1 | 1 | SH3_9 | 324 | 374 | 1.7e-11 | 43.5 | 1.0e-14 | 3.1e-11 | 42.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_470.1_00795.t1 | gi|755960181|ref|XP_011304653.1| | PREDICTED: LIM and SH3 domain protein Lasp isoform X2 [Fopius arisanus] | 0.0 |
| pfu_aug2.0_470.1_00795.t1 | gi|524895693|ref|XP_005104328.1| | PREDICTED: LIM and SH3 domain protein F42H10.3-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_470.1_00795.t1 | gi|676481839|ref|XP_009062508.1| | hypothetical protein LOTGIDRAFT_128533 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_470.1_00795.t1 | gi|340709786|ref|XP_003393482.1| | PREDICTED: LIM and SH3 domain protein Lasp [Bombus terrestris] | 0.0 |
| pfu_aug2.0_470.1_00795.t1 | gi|755960178|ref|XP_011304652.1| | PREDICTED: LIM and SH3 domain protein Lasp isoform X1 [Fopius arisanus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_470.1_00795.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_470.1_00795.t1 atgtgcaagggcagacattatcccacaaccaaacacacggtagtagcagacacaccagaggccagaagaatagcagaaaa cacaaaaatacaaagtaatattgaataccagaaagattttcaggattctaagtccaaaatttatgtcgtcacagatacac ctgagctcagacgacatttacaaaataccaaaaacataagcttgatagaatatcaaaaagactttgaaaagtcaaaggga gctaactgttaccagatcgcagatacagttgccatggaaaccattcgcagaaatacacaaaataccagtttgattaagta ccatgaagattttgagaagatgaagggtaaaaaagcgtcggtggtggacgaccctgaactgatgaggataaaacagaaca cggcaatacaaagtaacatagagtatcacaagacaagagatcagttagctcaaatggaacagagacgacccgcgcacgaa cagacagtatccacaaaaaagaaatgtgatggtattttcttacaacagttaccatggttacttctatctttatttaaata tttaccagctttctttaagcttgtatctaattctggcatggttttcccttgctttaacattatagaacctcgtgcaagag cgaatcctggtaaaattagtgaatacgatcccgaaatgaattcaagtggaacgccatattcagctagaaatcaacaggct cgggttgtttatgattctaacgtaggaaaagtcgagccggctggatcgtctagacgtgttggatctatcgcagattacga cccgatgaatgaaaactatggctctatcagtggtcagtacagggaaccccctagaaaccagcaaccagcacctcaacaac atcaacaacaacaacaataccagcaacctcctcctcctcaacctgtacagcaaccacagcaacctgttagtaaagagatg gtatgccaggcaatgtacgattacacggccgcagatacagatgaagtcagttttatggacggtgacctaattagacattg tcagccgatagacgcaggatggatggagggaacggtagaacgcactgggcagcgaggaatgttaccgtcaaattacgtcg agccacttgcccgctaa |
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Protein
| Protein ID | pfu_aug2.0_470.1_00795.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_470.1_00795.t1 MCKGRHYPTTKHTVVADTPEARRIAENTKIQSNIEYQKDFQDSKSKIYVVTDTPELRRHLQNTKNISLIEYQKDFEKSKG ANCYQIADTVAMETIRRNTQNTSLIKYHEDFEKMKGKKASVVDDPELMRIKQNTAIQSNIEYHKTRDQLAQMEQRRPAHE QTVSTKKKCDGIFLQQLPWLLLSLFKYLPAFFKLVSNSGMVFPCFNIIEPRARANPGKISEYDPEMNSSGTPYSARNQQA RVVYDSNVGKVEPAGSSRRVGSIADYDPMNENYGSISGQYREPPRNQQPAPQQHQQQQQYQQPPPPQPVQQPQQPVSKEM VCQAMYDYTAADTDEVSFMDGDLIRHCQPIDAGWMEGTVERTGQRGMLPSNYVEPLAR |
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