Gene
| Gene Model ID | pfu_aug2.0_471.1_04232 |
|---|---|
| Locus | scaffold471.1 : 270253 ... 271796 : - |
| To GenomeBrowser | scaffold471.1:270253..271796 |
| Genes list of scaffold | scaffold471.1 |
| Synonym | pfu_aug1.0_1187.1_43924 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| neuronal acetylcholine receptor subunit alpha-9-like | GO:0006810 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_471.1_04232.t1 | 1 | 1 | Neur_chan_LBD | 29 | 226 | 7.69999e-40 | 136.3 | 1.4013e-43 | 1.0e-39 | 135.9 |
| pfu_aug2.0_471.1_04232.t1 | 2 | 1 | Neur_chan_memb | 234 | 365 | 9.4e-17 | 61.6 | 1.3e-20 | 9.4e-17 | 61.6 |
| pfu_aug2.0_471.1_04232.t1 | 2 | 2 | Neur_chan_memb | 374 | 408 | 9.4e-17 | 61.6 | 0.033 | 240.0 | 1.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_471.1_04232.t1 | gi|742192989|ref|XP_010891156.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-10 isoform X1 [Esox lucius] | 0.0 |
| pfu_aug2.0_471.1_04232.t1 | gi|573879998|ref|XP_006628210.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-10-like [Lepisosteus oculatus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_471.1_04232.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_471.1_04232.t1 atggctataggatgctacatccatctgattttgtgtcttctgcttgtactaccgattcaggctggaaatcgtacgcatgt ggcctcgctcatgagcgatttgctcacgggatatgatacgtcgatacgtccgttctatgaccagcgtatggacgtaatgg tgggattctacttgttctctatacaggagttggatgaaaaatcagggatcctcacctcagtgggcggtccgtactatgcg tggttcgatcccagactaatgtggaatccagcagactatggggacatcgagaacttccctttaccgacgacaagagtatg gtaccctaacctatatcttctaaacccagcggacaaaatggaacctattgctgatacttctttcttttccagacctatgt attttggttacgtatggcgatatctttcttctattatgaaaacttcatgttctgttgatatgacgtatttcccgttcgac actcaggagtgtcaaatagagctttctccttgggggttctcctcagaagagatattcctgaaaaatgcgtccacaaccgt agacatgacttacttccaggagaacgcacagtggagagtggtaagcactagactgaaggaacatagaattttggactttg aaggaatagttgctgctgttttctcgttaaagaggaaaccagagtacttcgttgtgaatataattgcaccaatttttatg ctttgcctgttaaacccacttgtttttctgcttccgacagagagcggtgagcgaatatcttacacaatcaccatattttt gtctttggctgttttcatgacgcttattagcgacaacatgcccaagtcctccgagccgatggcgcgtctttcttacattc tcctggcaactatggcctacagtacaactctctgtgtactgtctatttttctgatgcgagtccattttcgcagcaaggat aaacctattccaaaatggctgtacgccatggtgtcgttgttacgctgtaagtgtctttgttgttgccgcaggaagaaagg gaactcgtcagccactaaggttatcagtatgtcagagaaaccgaaagccgcgttcactgatgacgaggagactacagaca ttcaacaagaaataactacatgggttgagatggccgctgtcttggatggcatatgttttacctattcctgtgtatttctt gctttgatgacaatgaccatgttcctgttgctattagtttga |
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Protein
| Protein ID | pfu_aug2.0_471.1_04232.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_471.1_04232.t1 MAIGCYIHLILCLLLVLPIQAGNRTHVASLMSDLLTGYDTSIRPFYDQRMDVMVGFYLFSIQELDEKSGILTSVGGPYYA WFDPRLMWNPADYGDIENFPLPTTRVWYPNLYLLNPADKMEPIADTSFFSRPMYFGYVWRYLSSIMKTSCSVDMTYFPFD TQECQIELSPWGFSSEEIFLKNASTTVDMTYFQENAQWRVVSTRLKEHRILDFEGIVAAVFSLKRKPEYFVVNIIAPIFM LCLLNPLVFLLPTESGERISYTITIFLSLAVFMTLISDNMPKSSEPMARLSYILLATMAYSTTLCVLSIFLMRVHFRSKD KPIPKWLYAMVSLLRCKCLCCCRRKKGNSSATKVISMSEKPKAAFTDDEETTDIQQEITTWVEMAAVLDGICFTYSCVFL ALMTMTMFLLLLV |
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