Gene
| Gene Model ID | pfu_aug2.0_471.1_04233 |
|---|---|
| Locus | scaffold471.1 : 275077 ... 285769 : + |
| To GenomeBrowser | scaffold471.1:275077..285769 |
| Genes list of scaffold | scaffold471.1 |
| Synonym | pfu_aug1.0_1187.1_43925 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| 5-hydroxytryptamine receptor 3c-like | GO:0006811 GO:0016020 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_471.1_04233.t1 | 2 | 1 | Neur_chan_LBD | 1 | 172 | 0.0 | 241.6 | 1.0e-35 | 3.0e-32 | 111.5 |
| pfu_aug2.0_471.1_04233.t1 | 2 | 1 | Neur_chan_memb | 179 | 264 | 3.2e-21 | 76.3 | 4.6e-13 | 1.3e-09 | 38.2 |
| pfu_aug2.0_471.1_04233.t1 | 2 | 2 | Neur_chan_LBD | 287 | 486 | 0.0 | 241.6 | 1.90016e-42 | 5.8e-39 | 133.4 |
| pfu_aug2.0_471.1_04233.t1 | 2 | 2 | Neur_chan_memb | 493 | 742 | 3.2e-21 | 76.3 | 2.0e-14 | 5.9e-11 | 42.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_471.1_04233.t1 | gi|507928403|ref|XP_004675455.1| | PREDICTED: 5-hydroxytryptamine receptor 3C-like [Condylura cristata] | 5.04467e-44 |
Transcript
| Transcript ID | pfu_aug2.0_471.1_04233.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_471.1_04233.t1 atgtacttgttctcgatcgtggagtttgacgaaattgcgggaactatcacgataatgggcggattatattattcgtggta tgacaccaggttactgtgggatcctagtcaatatggaaacacctatgaaattgtggtgccaagtaaaaaggtttgggtac catatatctactacctaaatcctgctgataacatggttcccgttggtaagaaatatttcacaaatcgtgtctactatacc ggatcagtgatgagaaatgtcggttccatcatgaagacaacttgtgacgttgacattacttattttccgtatgatgaaca aacatgtgagattgacttttatgcgttcggatacactagttcagaagtgtattttcaaattagtaatagtcaagttgaca tgttttacttccgcaaaaattcgcaatggaatgttcaatcagcaatcatcaaaccacatgacaatgttgaattcaacgga acaatcactgctgttcttgtcctaaaaagacacccagaatatttcactgtgaatattttgattccggtcctgttcctttg tctcctgaatccagtcgtgtttctgttaccagcagagagtggtgagaggatttcgtatactgttaccatattcctctcac tggcagtatttatgacgcttgtcaatgacaatatgccaaaatcatccaagcctatgtcgcgattgtctatctttctgatc atgatgatcgggtcgagtacaatgctttgtatgttggccataataataacaaaggtctacttcagggaggattcaaaccc ggtgccaaactggatcattaagtttgtgccttgtcaagcaaacaacctcacagatgccgaaaatatacatacacatattt tcacgggctatgaccgggatatttgcccaataaacggtcaaacgctcattgtggatgttggtatgtacttattctctatc gttgatttcgatgaaatttcggggacgattacaataatgggtggattatatcactcgtggtatgacgctagattacaatg ggatcctagtcgatatggggatatcagagaaattgttgtgccaaataaaaaggtttgggtaccatacatctactacctaa atcctgctgataacatggtcccagtcggaaacagatatttcacaaatcgtgtccaccgtaatggggtagtagtgagaaat gcctgttccataatgaaaacaacgtgtgaagtcgacatcacctactttccgtttgatcaacagacgtgtgaaattgactt ttatacgttcggatattacagcacagaagtatatcttaaaataagtaataggcaagttgatatgttttacttccgcaaaa attcgcaatggaatgttcaatcagcaatcatcaaaccaaatgacaatgttgaattcaatggaacaatcactgcagttctt gtcctcaaaagacatcctgaatactttactgtgaatattttgattccggtcctgtttctttgtctccttaatccggtcgt gtttctgttaccagcagagagtggtgagaggatttcgtatactgttaccatattcctctcactggcagtatttatgacgc ttgtcaatgacaacatgccaaagtcgtccaagcctatgtcacgattgtctgttcttcttatcatgatgatcgggtctagt acagtcctgtgtctccttgcaatcattataacaaagatctacttcaaagacgattctaacccagtgccaaactggactgc taagattttgcacatcatgaaattcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnngatggtgttcaaaattctttaagatgagaagagtcgaatcgtatggtataagcaatgatga tagcacacctcaaaccgtgagcgatgacaacatacattacatgaagaaggaaaaagattttgccaaagagaacttccaag gtgacagttatcaaaacaatgacaacagaaatgacgatgatgatcacagtcaagaaaagatgtcatggaaacaactagcc cttgagatggatcaagtggccttcatctattctgtaatttttctcataatcacgcttgttgtatttattgtagatggatt gctagcaaaatga |
|
Protein
| Protein ID | pfu_aug2.0_471.1_04233.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_471.1_04233.t1 MYLFSIVEFDEIAGTITIMGGLYYSWYDTRLLWDPSQYGNTYEIVVPSKKVWVPYIYYLNPADNMVPVGKKYFTNRVYYT GSVMRNVGSIMKTTCDVDITYFPYDEQTCEIDFYAFGYTSSEVYFQISNSQVDMFYFRKNSQWNVQSAIIKPHDNVEFNG TITAVLVLKRHPEYFTVNILIPVLFLCLLNPVVFLLPAESGERISYTVTIFLSLAVFMTLVNDNMPKSSKPMSRLSIFLI MMIGSSTMLCMLAIIITKVYFREDSNPVPNWIIKFVPCQANNLTDAENIHTHIFTGYDRDICPINGQTLIVDVGMYLFSI VDFDEISGTITIMGGLYHSWYDARLQWDPSRYGDIREIVVPNKKVWVPYIYYLNPADNMVPVGNRYFTNRVHRNGVVVRN ACSIMKTTCEVDITYFPFDQQTCEIDFYTFGYYSTEVYLKISNRQVDMFYFRKNSQWNVQSAIIKPNDNVEFNGTITAVL VLKRHPEYFTVNILIPVLFLCLLNPVVFLLPAESGERISYTVTIFLSLAVFMTLVNDNMPKSSKPMSRLSVLLIMMIGSS TVLCLLAIIITKIYFKDDSNPVPNWTAKILHIMKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXWCSKFFKMRRVESYGISNDDSTPQTVSDDNIHYMKKEKDFAKENFQGDSYQNNDNRNDDDDHSQEKMSWKQLA LEMDQVAFIYSVIFLIITLVVFIVDGLLAK |
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