Gene
| Gene Model ID | pfu_aug2.0_471.1_04235 |
|---|---|
| Locus | scaffold471.1 : 302655 ... 309946 : - |
| To GenomeBrowser | scaffold471.1:302655..309946 |
| Genes list of scaffold | scaffold471.1 |
| Synonym | pfu_aug1.0_1187.1_43927 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| neuronal acetylcholine receptor subunit alpha-9 | GO:0006810 GO:0044699 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_471.1_04235.t1 | 1 | 1 | Neur_chan_LBD | 49 | 247 | 5.0e-37 | 127.1 | 2.69999e-40 | 1.3e-36 | 125.7 |
| pfu_aug2.0_471.1_04235.t1 | 2 | 1 | Neur_chan_memb | 257 | 486 | 5.9e-16 | 59.0 | 2.7e-19 | 1.3e-15 | 57.9 |
| pfu_aug2.0_471.1_04235.t1 | 2 | 2 | Neur_chan_memb | 565 | 612 | 5.9e-16 | 59.0 | 0.32 | 1600.0 | -1.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_471.1_04235.t1 | gi|296196680|ref|XP_002745944.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-9 [Callithrix jacchus] | 1.00053e-42 |
| pfu_aug2.0_471.1_04235.t1 | gi|706122064|ref|XP_010196675.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-9 [Colius striatus] | 3.00018e-42 |
Transcript
| Transcript ID | pfu_aug2.0_471.1_04235.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_471.1_04235.t1 atgatagatattcgtcagcttgttaaagatactctgcgaattgaagacaatatgtggaatcttctttgtatgaacagtgt tatattcttctcagcattaatgattcaaggagtgagcacaaatacaacgaattatacacttgctgaagcattgcagaatg atctttttgcgaattacaagccgagtgtacggccggagtttgacaaacggcttaatgtttccgtgggttataacctcttc tctataaaggactttgacgaaaaatcaggcaccttattttcggtcggcggtccttcttatgtatggcgtgattcaagatt agcatgggatcaatcaaagtatggaaatatatctcacctcacgctcaagtcctaccaaatatggtatcccgatttgtatc tggtgaatcctgcacatgtaatggaaccaatcggtgattcatcatttttccctactgtcgtctccaatggtatggttttt aggtcaatttcatctaatctcatgacatcatgtaacgttgatatgacatattttccattcgacacgcaggtatgcaacat tgaacttgtagcgtggggctactcgagtaaggatgtattcctaacaaacatgggtgagacagtggttctaacttactttc aggagaacagtctatggcaaatggagagtgcagtcttgaagccacataaacttaaagctgtcgacggaatggtagccgcg gttatttcattgaaaagaagaccgaaatactttgtaataaacattttttgcccagtattcatgctgtgtatattgaatcc cttggttttcctcctaccgacagaaagcggagaacgtatatcttacaccatcaccatattcttgtctcttgccgtgttta tgacattgataagtgacaacatgcccaaatcatcagaaccgatgtcacgtctgtcatacatattgcttgtcacaatggcc tacagtactactctctgtatagcttcgatctacatcatgcatgtacgcttccgaccgaaaaatcgaagaatttctaaaac agttgagaagattattttcattcttcaatggcattgtctgtctgtttgtcgcaaaagacagacagatagcaaaatggcaa cggaagatattgaatctacccagagtaaaaggagagcaaaaataaccaacaaacaaaaatattttgatgccaaagatgcc aggaagtactacaacatcaatgtctataaagcctaccagtcccgcaagtttaggactatgggaaagaaatatacagttca attcaaggacatgagtaaagacatcacgcccacagaatttccgaaagtactgcctaacatcatgaatactttggtggacg atttaaagaacgagaacaacatcaaagatgcagactatgttcggtccattgtacaccactcttctttgaagtccgaaatc tggattccattttctcaaagcacggagatgtctggggacgccattttgcaggaagtcgacaaagtccaacaatcgaacga agacttcaagatggaagatggtcagactaccatagacttgttgcacgtagagatacccattgggagtggcggaaacagta agaaacatctgcacacagacaatgaattttttagaaaaggaaagaagtcaattgtccgcatcgtgaatgatgaggaccat atgtgtttgtcccgagccattgtcgtcactattgttcatgccaacagaccacagaaagactccgaagattggaaaaaaga atgcgacgagattataagaccaaaaggctacaaactacaaacagagcgagccaaagctttatgcgacaaggcaggggtct caagtgaacatggttgcggaccggctgaatgggagaaattccaaaaagtcctgactcctcaatatcgtctaaagatctac cagcagaacgctgtagccaaaactctaaagtttgacgttctgtacaagaatgctttcggaaagtttcaattctccacata tctatattccatggaaacatggaccatgaaaatgtctcgcttatcacgtttaccagactcccaaaattttagactttgtt accatggtaaacgatgctccaatttcacaatgttctataaattccggcttaatacatcatacatgactctttcatttctg tga |
|
Protein
| Protein ID | pfu_aug2.0_471.1_04235.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_471.1_04235.t1 MIDIRQLVKDTLRIEDNMWNLLCMNSVIFFSALMIQGVSTNTTNYTLAEALQNDLFANYKPSVRPEFDKRLNVSVGYNLF SIKDFDEKSGTLFSVGGPSYVWRDSRLAWDQSKYGNISHLTLKSYQIWYPDLYLVNPAHVMEPIGDSSFFPTVVSNGMVF RSISSNLMTSCNVDMTYFPFDTQVCNIELVAWGYSSKDVFLTNMGETVVLTYFQENSLWQMESAVLKPHKLKAVDGMVAA VISLKRRPKYFVINIFCPVFMLCILNPLVFLLPTESGERISYTITIFLSLAVFMTLISDNMPKSSEPMSRLSYILLVTMA YSTTLCIASIYIMHVRFRPKNRRISKTVEKIIFILQWHCLSVCRKRQTDSKMATEDIESTQSKRRAKITNKQKYFDAKDA RKYYNINVYKAYQSRKFRTMGKKYTVQFKDMSKDITPTEFPKVLPNIMNTLVDDLKNENNIKDADYVRSIVHHSSLKSEI WIPFSQSTEMSGDAILQEVDKVQQSNEDFKMEDGQTTIDLLHVEIPIGSGGNSKKHLHTDNEFFRKGKKSIVRIVNDEDH MCLSRAIVVTIVHANRPQKDSEDWKKECDEIIRPKGYKLQTERAKALCDKAGVSSEHGCGPAEWEKFQKVLTPQYRLKIY QQNAVAKTLKFDVLYKNAFGKFQFSTYLYSMETWTMKMSRLSRLPDSQNFRLCYHGKRCSNFTMFYKFRLNTSYMTLSFL |
|