Gene
| Gene Model ID | pfu_aug2.0_4714.1_16016 |
|---|---|
| Locus | scaffold4714.1 : 1526 ... 7737 : + |
| To GenomeBrowser | scaffold4714.1:1526..7737 |
| Genes list of scaffold | scaffold4714.1 |
| Synonym | pfu_aug1.0_1263.1_43964 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| iron-sulfur protein nubpl | GO:0005524 GO:0005739 GO:0032981 GO:0051539 GO:0070584 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4714.1_16016.t1 | 2 | 1 | AAA_31 | 55 | 112 | 4.6e-09 | 36.4 | 2.7e-11 | 4.0e-08 | 33.3 |
| pfu_aug2.0_4714.1_16016.t1 | 1 | 1 | CbiA | 56 | 232 | 5.3e-15 | 55.3 | 5.1e-18 | 7.5e-15 | 54.8 |
| pfu_aug2.0_4714.1_16016.t1 | 2 | 2 | AAA_31 | 156 | 181 | 4.6e-09 | 36.4 | 0.31 | 460.0 | 0.6 |
| pfu_aug2.0_4714.1_16016.t1 | 1 | 1 | ParA | 170 | 249 | 1.8e-36 | 123.8 | 3.0e-39 | 4.5e-36 | 122.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_4714.1_16016.t1 | gi|291234415|ref|XP_002737144.1| | PREDICTED: iron-sulfur protein NUBPL-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_4714.1_16016.t1 | gi|676488911|ref|XP_009064767.1| | hypothetical protein LOTGIDRAFT_196625 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_4714.1_16016.t1 | gi|742193322|ref|XP_010891248.1| | PREDICTED: iron-sulfur protein NUBPL [Esox lucius] | 0.0 |
| pfu_aug2.0_4714.1_16016.t1 | gi|89272112|emb|CAJ81382.1| | novel protein similar to nucleotide binding protein 1 (MinD homolog, E. coli) nubp1 [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_4714.1_16016.t1 | gi|62857965|ref|NP_001016573.1| | iron-sulfur protein NUBPL [Xenopus (Silurana) tropicalis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_4714.1_16016.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4714.1_16016.t1 atgttacagacatcctgtataagatacttacagacaaacgctgagacctgtgacaagttggctcagcctctactgatggg aatcaagggagagggaagtcggacaaatcctgccgtgtcccgaggactaccaaaaaggcttcctatagcaggggtagaca atgtgattgtggtagcctcaggcaaagggggtgtgggaaaatctaccactgctgttaatcttgcactaggattatcagct aacgaacatagtaagacagtggggttactagatgctgatatttatggtccttctattccaacaatgatgaatctccatgg agaaccagaactgaccaatcgaaaaccttttctcagtctaatacaatgttactcccattataatattttcctttttctca gtatgtccatggggtttttagtagatgagaaatcacccatcgtatggaggggccttatggtcatgtcagctgtccagagg cttctaaggcaagtagcatggggccctctagattatcttgtagttgacatgccaccaggaacgggagacgttcaactgtc actgtcacaaaatatacccatagatggcgctgtaatagtgtcaacacctcaggatatcgcactgctggacgctcgacggg gtacggagatgttcaggaaggttgatgtcccggtgcttggtctcgtacagaacatgagtgtctatatttgtcctaaatgt ggacacacagatcatatattcggccagaatggagcctctgctatagctcaagatatgaatctagagatcttaggtatgta g |
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Protein
| Protein ID | pfu_aug2.0_4714.1_16016.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4714.1_16016.t1 MLQTSCIRYLQTNAETCDKLAQPLLMGIKGEGSRTNPAVSRGLPKRLPIAGVDNVIVVASGKGGVGKSTTAVNLALGLSA NEHSKTVGLLDADIYGPSIPTMMNLHGEPELTNRKPFLSLIQCYSHYNIFLFLSMSMGFLVDEKSPIVWRGLMVMSAVQR LLRQVAWGPLDYLVVDMPPGTGDVQLSLSQNIPIDGAVIVSTPQDIALLDARRGTEMFRKVDVPVLGLVQNMSVYICPKC GHTDHIFGQNGASAIAQDMNLEILGM |
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