Gene
| Gene Model ID | pfu_aug2.0_474.1_14197 |
|---|---|
| Locus | scaffold474.1 : 98996 ... 102085 : + |
| To GenomeBrowser | scaffold474.1:98996..102085 |
| Genes list of scaffold | scaffold474.1 |
| Synonym | pfu_aug1.0_12842.1_25093 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_474.1_14197.t1 | 1 | 1 | Fibrinogen_C | 157 | 294 | 2.9e-22 | 79.4 | 6.7e-25 | 5.0e-22 | 78.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_474.1_14197.t1 | gi|198474824|ref|XP_002132784.1| | GA25685 [Drosophila pseudoobscura pseudoobscura] | 2.0e-13 |
| pfu_aug2.0_474.1_14197.t1 | gi|528492219|ref|XP_684578.3| | PREDICTED: fibrinogen-like protein 1 [Danio rerio] | 2.0e-13 |
| pfu_aug2.0_474.1_14197.t1 | gi|92096546|gb|AAI15321.1| | LOC563523 protein [Danio rerio] | 2.0e-13 |
| pfu_aug2.0_474.1_14197.t1 | gi|597777727|ref|XP_007252514.1| | PREDICTED: fibrinogen-like protein 1-like [Astyanax mexicanus] | 2.0e-13 |
| pfu_aug2.0_474.1_14197.t1 | gi|260828675|ref|XP_002609288.1| | hypothetical protein BRAFLDRAFT_86801 [Branchiostoma floridae] | 4.0e-13 |
Transcript
| Transcript ID | pfu_aug2.0_474.1_14197.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_474.1_14197.t1 atgacaggaagagggcgaacaatgggtcgcttgctgagagaaattgcaaatttggaaaggcgcaatacagagttggagaa gcagtgtagtggtaaaacggaacgacctgaagataaaacaagaaagatgagcgaagattctaggaatcctcaaacagatg ggagatatgttaatattagttctataggaagagttctttcaaaagcgaacaactgtttctgtaataacatgaacggtaat aatgacaacatctcacggatgctaagggaagtcacgaaactgagagatcgttaccagcgtttagaaagaaaatatcagaa tgaaacgaaacaatttgaaaatcgttatagaaatttagagaggatatttaatgagacaaagagtaggtggtacaaggacg ggacatgtatcaatggaatagagggatcgaaaagaagagttaacattgttgattgcaatcaggaaacaggaaacgacaag attcatagattaacagaagaacgaccttcagagatgctctttaaattcatcgatagatggggagcaatgtactgggcaag ctacacaaacgtaactgtagctgacgagaatgatttctacagattacattttgacagaaactcgtacaacggaacagcag gtgacgccttgtattttggtggttctctgtgggaaaacgcccacaacatggcattctctacatgggataatgacaatgac atgtgggatgacggtaactgtgcgcattcatcgggatggtggtataacgactgtggaggggcgtggttaacaaagcgcaa tcacgagtgggcgtctcctcacgataaaccgcgggaaattcaaacttctgttgtaatgataagggctatgtcagaatggt acacagtgtga |
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Protein
| Protein ID | pfu_aug2.0_474.1_14197.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_474.1_14197.t1 MTGRGRTMGRLLREIANLERRNTELEKQCSGKTERPEDKTRKMSEDSRNPQTDGRYVNISSIGRVLSKANNCFCNNMNGN NDNISRMLREVTKLRDRYQRLERKYQNETKQFENRYRNLERIFNETKSRWYKDGTCINGIEGSKRRVNIVDCNQETGNDK IHRLTEERPSEMLFKFIDRWGAMYWASYTNVTVADENDFYRLHFDRNSYNGTAGDALYFGGSLWENAHNMAFSTWDNDND MWDDGNCAHSSGWWYNDCGGAWLTKRNHEWASPHDKPREIQTSVVMIRAMSEWYTV |
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