Gene
| Gene Model ID | pfu_aug2.0_474.1_14198 |
|---|---|
| Locus | scaffold474.1 : 103764 ... 106935 : - |
| To GenomeBrowser | scaffold474.1:103764..106935 |
| Genes list of scaffold | scaffold474.1 |
| Synonym | pfu_aug1.0_12842.1_25092 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_474.1_14198.t1 | 8 | 1 | LRR_6 | 107 | 117 | 3.4e-07 | 29.6 | 0.066 | 240.0 | 2.2 |
| pfu_aug2.0_474.1_14198.t1 | 8 | 2 | LRR_6 | 133 | 155 | 3.4e-07 | 29.6 | 0.0003 | 1.1 | 9.5 |
| pfu_aug2.0_474.1_14198.t1 | 8 | 3 | LRR_6 | 158 | 182 | 3.4e-07 | 29.6 | 1.9e-06 | 0.0072 | 16.2 |
| pfu_aug2.0_474.1_14198.t1 | 8 | 4 | LRR_6 | 185 | 203 | 3.4e-07 | 29.6 | 0.25 | 910.0 | 0.5 |
| pfu_aug2.0_474.1_14198.t1 | 8 | 5 | LRR_6 | 335 | 343 | 3.4e-07 | 29.6 | 4.0 | 15000.0 | -3.4 |
| pfu_aug2.0_474.1_14198.t1 | 8 | 6 | LRR_6 | 356 | 377 | 3.4e-07 | 29.6 | 0.0032 | 12.0 | 6.3 |
| pfu_aug2.0_474.1_14198.t1 | 8 | 7 | LRR_6 | 387 | 396 | 3.4e-07 | 29.6 | 2.8 | 10000.0 | -2.8 |
| pfu_aug2.0_474.1_14198.t1 | 8 | 8 | LRR_6 | 455 | 466 | 3.4e-07 | 29.6 | 0.45 | 1700.0 | -0.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_474.1_14198.t1 | gi|260825915|ref|XP_002607911.1| | hypothetical protein BRAFLDRAFT_74861 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_474.1_14198.t1 | gi|291236474|ref|XP_002738164.1| | PREDICTED: uncharacterized F-box/LRR-repeat protein C02F5.7-like [Saccoglossus kowalevskii] | 5.0e-37 |
| pfu_aug2.0_474.1_14198.t1 | gi|390362221|ref|XP_003730099.1| | PREDICTED: uncharacterized protein LOC100890998 [Strongylocentrotus purpuratus] | 2.0e-32 |
| pfu_aug2.0_474.1_14198.t1 | gi|676450798|ref|XP_009052496.1| | hypothetical protein LOTGIDRAFT_231759 [Lottia gigantea] | 3.0e-30 |
| pfu_aug2.0_474.1_14198.t1 | gi|557017312|ref|XP_006009064.1| | PREDICTED: uncharacterized protein LOC102353058 isoform X1 [Latimeria chalumnae] | 9.0e-23 |
Transcript
| Transcript ID | pfu_aug2.0_474.1_14198.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_474.1_14198.t1 atgccgagacacaaaagtgtcaaagcactaaagtcgatttgtatcacaaacattgcttcaaatttcgacaaattttggtg tcgatcctttgacgagaatttttcagacctgccaggacttttatatgttattggacccatggaaatgttaaccagtgaat tgacagaattgctgatcacagaactacatgagaggaaacttctgaaagccaaacattttccgctacttttccacgatgcg gtacagaaactggaattgcaatattgtctgtgtaatctatacaaacaagataatttagtgcagaccataccatggagatg cccaaggttagtgcacctgaatcttaacaacttgagtcgcctgtccaagacaacattttatggtctggtagagaatctac caaaactggagtcattaagtttggagaacacaaaatgcaccgatgatatactacatagtataggtttatactgcaaaaga cttgtttctcttaatctacagaactgtagcagtattactgatagaggagtcaagtttctgtgtgagaatacattgccaaa tctgcataatgtaaatctaatcaacacaaaagtcacgcttcgcggagttgttgactttatcacaaaatatcctaacttat ttgagttacagcacacaaattctatcatggcattttatgacgcatatcagaaaatgagttctggtgcaaatgataccaaa atcaagcatgatcaaaggaaggttcgatcgttacgatattctcacggagcttacatggacggaaaagaagaaactctaac tacagagatgttagaagtcgtttgtaaattctgtcctcttgttactcatgttgaactttatgctatcggaaacaatagta atatacttgcttttgaacatctgaaacagttacataggttagaaattgtatcagaacatttgtatgacgattttcaaatt gattttaaggggctctgtaatttactcagcattattggaagtcaaatttccgagcttatattaagtggaatggcagtata ttcattagaaatgattggaaacctatgtcctaatttacatgttttagaaatttcagattgttatgatgctgacattttag acaaaggcctagttatggaaaacaaggaatgttttaggaaattacggaacttctgtatcagggacaatgctcctaaggga aaattttcttttcacgaacaaagttttcacactttatttgaaaggtcagaacttttgcagcaattagaaatgtggaatgt taatactttttcaactgagacacttgaaaatgcgatatcaaagcattcttttcagtacctaaaatctatgacacttcatg aatgtaacaatatagatggcgaggggatctttagcttacttcagacagaaaatgacctgagtatgttggtttcacatcaa tgtcactgtgtggataggagagattaccatagataccaaagattttgtagtcagcagaatttagacattactattagttg gacttag |
|
Protein
| Protein ID | pfu_aug2.0_474.1_14198.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_474.1_14198.t1 MPRHKSVKALKSICITNIASNFDKFWCRSFDENFSDLPGLLYVIGPMEMLTSELTELLITELHERKLLKAKHFPLLFHDA VQKLELQYCLCNLYKQDNLVQTIPWRCPRLVHLNLNNLSRLSKTTFYGLVENLPKLESLSLENTKCTDDILHSIGLYCKR LVSLNLQNCSSITDRGVKFLCENTLPNLHNVNLINTKVTLRGVVDFITKYPNLFELQHTNSIMAFYDAYQKMSSGANDTK IKHDQRKVRSLRYSHGAYMDGKEETLTTEMLEVVCKFCPLVTHVELYAIGNNSNILAFEHLKQLHRLEIVSEHLYDDFQI DFKGLCNLLSIIGSQISELILSGMAVYSLEMIGNLCPNLHVLEISDCYDADILDKGLVMENKECFRKLRNFCIRDNAPKG KFSFHEQSFHTLFERSELLQQLEMWNVNTFSTETLENAISKHSFQYLKSMTLHECNNIDGEGIFSLLQTENDLSMLVSHQ CHCVDRRDYHRYQRFCSQQNLDITISWT |
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