Gene
| Gene Model ID | pfu_aug2.0_476.1_20814 |
|---|---|
| Locus | scaffold476.1 : 81276 ... 85905 : - |
| To GenomeBrowser | scaffold476.1:81276..85905 |
| Genes list of scaffold | scaffold476.1 |
| Synonym | pfu_aug1.0_2892.1_44520 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| nicotinic acetylcholine receptor a8 subunit | GO:0005216 GO:0006811 GO:0016020 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_476.1_20814.t1 | 2 | 1 | Neur_chan_LBD | 3 | 165 | 0.0 | 176.8 | 0.0 | 0.0 | 176.8 |
| pfu_aug2.0_476.1_20814.t1 | 1 | 1 | Neur_chan_memb | 239 | 472 | 0.0 | 250.8 | 0.0 | 0.0 | 250.4 |
| pfu_aug2.0_476.1_20814.t1 | 2 | 2 | Neur_chan_LBD | 349 | 416 | 0.0 | 176.8 | 0.27 | 1300.0 | -1.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_476.1_20814.t1 | gi|676436592|ref|XP_009047933.1| | hypothetical protein LOTGIDRAFT_212843 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_476.1_20814.t1 | gi|158262723|ref|NP_001103419.1| | nicotinic acetylcholine receptor alpha 8 subunit isoform 2 precursor [Tribolium castaneum] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_476.1_20814.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_476.1_20814.t1 atgaaggaatgggtagaccctaacttatcatgggagtcacgtgactatggcggtatagaaagtttgtatgttcccgctaa ggaaatatggcttccagatattgttctttataataatgccgatggtaactatgaagtaacgttgatgacaaaggcaatct tacattccaatggatcagtggtctgggagcctccagccatctataaaagttcctgtattattgacgtggagttcttccct tttgacatacagctctgtataatgaagtttgggtcatggtcatatgatggtatgcaagtagatcttgttcatttgtgtgc aaaagatgacgagtctacggatgtcattcagcatggaatagatctaagagacttttatcctaacgtagaatgggacatac ttgatgtcacagccaagaaaaattacaaacaatacatctgctgtccagaaacctttcctgatctgacatttaatattaca ataaggcgcaagactctttttcttacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaatctgatc atcccgtgcgttgctatttctttccttacggttctcgttttctatctccccagcgacagtggtgaaaagataaccttgtg tatctccatactgctctcacttaccgtgttcttcttactactagcggatattattccgccaacgagtatagttgtcccac taataggaaaatatttattgtttacaatgattctagtgactttgtccattcttgtaactgtaatcgtcttgaatgtacat tttcgatcaccatccacccactgtatgtcatcttgggttcgcggactctttttgtatattcttccgcgcatgctcctgat gaaagactcaaccatttgtcggaccaagtacaatagtgcatcgtcatcttacggatcgtacagtaatagggaaaaggtaa actttcttagcaaaagaagaatacacgaagaggaaacaacagtatttggccaaagagatcaagaaaatcacttagatgta caacaagaagaaacggaaactagggaaagtcctcaaagacaagcagatcagaggatgtatgatgccgtagaaaatatcaa ttttatagccaatcatttaagagaagaagatcacgagagactcatttcagaagactggaagtttgtagcaatggttctgg atcgtttatttctgttcatatttaccgcggcttgttttgccggaacaataggaataatcctacaggcacaaagcatatac gacaaccgtgatcctctcactccgcaaaacccgtatgtcacgtgcagaaacagtccgtaa |
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Protein
| Protein ID | pfu_aug2.0_476.1_20814.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_476.1_20814.t1 MKEWVDPNLSWESRDYGGIESLYVPAKEIWLPDIVLYNNADGNYEVTLMTKAILHSNGSVVWEPPAIYKSSCIIDVEFFP FDIQLCIMKFGSWSYDGMQVDLVHLCAKDDESTDVIQHGIDLRDFYPNVEWDILDVTAKKNYKQYICCPETFPDLTFNIT IRRKTLFLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLI IPCVAISFLTVLVFYLPSDSGEKITLCISILLSLTVFFLLLADIIPPTSIVVPLIGKYLLFTMILVTLSILVTVIVLNVH FRSPSTHCMSSWVRGLFLYILPRMLLMKDSTICRTKYNSASSSYGSYSNREKVNFLSKRRIHEEETTVFGQRDQENHLDV QQEETETRESPQRQADQRMYDAVENINFIANHLREEDHERLISEDWKFVAMVLDRLFLFIFTAACFAGTIGIILQAQSIY DNRDPLTPQNPYVTCRNSP |
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