Gene
| Gene Model ID | pfu_aug2.0_476.1_20815 |
|---|---|
| Locus | scaffold476.1 : 100336 ... 110535 : - |
| To GenomeBrowser | scaffold476.1:100336..110535 |
| Genes list of scaffold | scaffold476.1 |
| Synonym | pfu_aug1.0_2892.1_44521 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| beta-1 subunit of nicotinic acetylcholine | GO:0004889 GO:0016021 GO:0030054 GO:0045211 GO:0098655 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_476.1_20815.t1 | 1 | 1 | Neur_chan_LBD | 34 | 247 | 0.0 | 235.9 | 0.0 | 0.0 | 235.5 |
| pfu_aug2.0_476.1_20815.t1 | 1 | 1 | Neur_chan_memb | 254 | 487 | 0.0 | 264.1 | 0.0 | 0.0 | 263.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_476.1_20815.t1 | gi|241162235|ref|XP_002409079.1| | beta-1 subunit of nicotinic acetylcholine receptor, putative [Ixodes scapularis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_476.1_20815.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_476.1_20815.t1 atgaaagtatatgatagaaagacatgtgaacactttgtgatgatactgtgtttgtttgtgtgttgttttgtacggtttag tgagtgcaacgaagacgccaagagactgtaccacgacctgcttaaaaagtcctataacaagttgatacgacctgtgtcaa aaatttctgataaactgtacgtcaaaatggggatcaggctctctcagcttatagacatagatgagaagaatcaagtgatg accacaaacgtctggcttagacaggaatggactgagcgtcggcttcgttggaccccctctgagtatggtaacatgacaac catagaggtgccagctaatgatatatggactcctgatattgttctgttcaataatgccgatggtaactatgaagtaacgt tgatgacaaaggcaatcttacattccaatggatccgtggtctgggaacctccagctatttacaaaagttcttgtactata gatgtagagttcttcccctttgatatacagctttgtgtactgaaatttgggtcatggacatataatggacttcaagttga ccttgttcatttatgtgccaaggacaaggaatctactgacacaattttgaaaggaatcgatttacgagacttttatccca gtgttgaatgggatatacttgatgtcacagcaaagaaaaattacaatggctcagaatcatttccggacattacatttaac ataactatgagacgtaagaccctttttcacacagtgaaccttataattccttgtgttgctatttctttccttacggttct cgttttctatctccccagcgacagtggtgagaagattaccttgtgtatctccatactgctctcacttaccgtgttctttt tacttctagcggatattattccgccgacaagtagagttgttccattaatagggaaatatttattattcaccatgatttta gtgactttatccattcttgtcactgtgatcgtcttaaatgtacattttcgatcaccctctactcatacaatgtcaccatg ggtgcggagggttttcttaaatatccttccgcgcctgctcctgatgcggcgtccaaatttagacagtgaaaaaacaactc gaagtctgtccaagaattgcaatggtgtggaggtaacagactcttacaaacagctggtgtgtagacgttacaatccaatg gagggttgcttcctcagagccgtaccagagcaggatctgctgaccggtctacaggaaacagagaacatcattagacagcg caagtgtataccaaaggaaatcagagaagctgtagataacgtttgcttcattgcagaacatctaaggaaggaggacaggg aacgttcagtaatagaggactggaagtatgtggccatggtactggaccgtttgttcctgtggatatttacaacagcctgt gtggtggggacattcggcattattgtacaggcaccgaccatatacaacaacagtaacccactgactccacaggctccaaa tgatacatgtactaaactattttaa |
|
Protein
| Protein ID | pfu_aug2.0_476.1_20815.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_476.1_20815.t1 MKVYDRKTCEHFVMILCLFVCCFVRFSECNEDAKRLYHDLLKKSYNKLIRPVSKISDKLYVKMGIRLSQLIDIDEKNQVM TTNVWLRQEWTERRLRWTPSEYGNMTTIEVPANDIWTPDIVLFNNADGNYEVTLMTKAILHSNGSVVWEPPAIYKSSCTI DVEFFPFDIQLCVLKFGSWTYNGLQVDLVHLCAKDKESTDTILKGIDLRDFYPSVEWDILDVTAKKNYNGSESFPDITFN ITMRRKTLFHTVNLIIPCVAISFLTVLVFYLPSDSGEKITLCISILLSLTVFFLLLADIIPPTSRVVPLIGKYLLFTMIL VTLSILVTVIVLNVHFRSPSTHTMSPWVRRVFLNILPRLLLMRRPNLDSEKTTRSLSKNCNGVEVTDSYKQLVCRRYNPM EGCFLRAVPEQDLLTGLQETENIIRQRKCIPKEIREAVDNVCFIAEHLRKEDRERSVIEDWKYVAMVLDRLFLWIFTTAC VVGTFGIIVQAPTIYNNSNPLTPQAPNDTCTKLF |
|