Gene
| Gene Model ID | pfu_aug2.0_476.1_20816 |
|---|---|
| Locus | scaffold476.1 : 120621 ... 127085 : - |
| To GenomeBrowser | scaffold476.1:120621..127085 |
| Genes list of scaffold | scaffold476.1 |
| Synonym | pfu_aug1.0_2978.1_23137 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| acetylcholine receptor subunit beta-like 1 | GO:0005230 GO:0005886 GO:0006812 GO:0034220 GO:0044425 GO:0045202 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_476.1_20816.t1 | 2 | 1 | Neur_chan_LBD | 8 | 104 | 0.0 | 170.9 | 1.6e-24 | 6.0e-21 | 74.5 |
| pfu_aug2.0_476.1_20816.t1 | 2 | 1 | Neur_chan_memb | 111 | 343 | 0.0 | 380.9 | 0.0 | 0.0 | 183.7 |
| pfu_aug2.0_476.1_20816.t1 | 2 | 2 | Neur_chan_LBD | 347 | 463 | 0.0 | 170.9 | 5.1e-31 | 1.9e-27 | 95.8 |
| pfu_aug2.0_476.1_20816.t1 | 2 | 2 | Neur_chan_memb | 470 | 714 | 0.0 | 380.9 | 0.0 | 0.0 | 198.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_476.1_20816.t1 | gi|676436595|ref|XP_009047934.1| | hypothetical protein LOTGIDRAFT_112016 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_476.1_20816.t1 | gi|325296905|ref|NP_001191486.1| | non-alpha nicotinic acetylcholine receptor subunit precursor [Aplysia californica] | 0.0 |
| pfu_aug2.0_476.1_20816.t1 | gi|526117319|ref|NP_001267738.1| | acetylcholine receptor subunit beta-like 1-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_476.1_20816.t1 | gi|675849636|ref|XP_009010378.1| | hypothetical protein HELRODRAFT_71773, partial [Helobdella robusta] | 0.0 |
| pfu_aug2.0_476.1_20816.t1 | gi|751800252|ref|XP_011210122.1| | PREDICTED: acetylcholine receptor subunit beta-like 1 [Bactrocera dorsalis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_476.1_20816.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_476.1_20816.t1 atggacaagaattccgattacaatatttatcagattcctcccgcaatctttaaaagctcttgtgaaatcgatgtcaagta ttttcccttcgatgaacaagtgtgtgaaatgaagtttggatcatggaccttccaggcagaccaactcaatttcacctata caaagttcagaggacttgatttgacagattacctcaaaagtggaacatgggacctggtggattgtcccgcaaggatagaa atttgtgccgacgaaaatacgaaacaagctaaagctctttacatcgcacagtttcgtattcgacgaaagacgctttttta cacagtaaacttgttgattccttgtatgctaatttctttcgtcagtataagtgtttttctgctcccacccgattcctgtg aaaaaatcactttgattatttccattctccttgccctggtggtgtttttgctccttatctctaaaatgttgccaccgtct ttgacgattccccttatagcaaagtatttgatgtttaattttctgatgaacataattgccattgggtccacagtctttgt cataaacaggaactataggacagcaaggacccatcgtatgccaaaatggacaagggtagttttcctgaactatttgccac ggatattattcatgaagcgcccaaatcacgatgacagatggcaaaaatcaaatatgtccgacataactgcttctaaatct tcattggacgcacatagcaggcttgattttgatatcaacgatgtaagattggacaaagaaagagatactaaacactccaa aagacccaaaaggaaaacaagtgatccggaaaatgatattacctccaactttcgtttatcaccggaaatggccgaagcta acgaagcgattgctttcatgaggcgccatctagagtgggaggataaatatgaaacggtacaagatgattggaaatacgtt gccttggtgatagaccgtcttttactgtatatatttctattagtgactgtttgtggtactttggccatcctatttcatgc agatgggaaatacgaagtgtcgtaccagtccaatatactggtaagttatgacaccctagtttattggataccaccggcca tttataaaagctcctgtactatagacgtggaatacttcccttttgacgagcaaatttgtgaaatgaaattcgggtcatgg acttttacggcggaacaattgaactttactttctttaataacatggatagtttagattttacggactatctcaagagtgg atcgtgggacataataaaaagccctggcaaaattgatactattcaagacccgatgaccggggagaaaaaggcactggtca tatttcagtttgtccttaggaggaaaactttgttttacacagtaaacttaataattccttgcgtactgatatcatttgtg agcgtgtgcgtcttcttgctgccggctgatgcatgtgagaaaataacgctttgtatctccgtgcttcttgcattagttgt gtttttactactgatctcaaaaattcttccgccatcgaagaaaatcccactgatcgctaattacatgcttttcacctttg ttatgaatatattagctatttgtttgacagtttttgttataaacggaaactataggacacctcgtacacatagaatgcca aactgggcgagaactattttcttatattaccttcctcaacttttattgatgagaaggcctaatcacaacgaaagatggcg gaaatctaaggaggaaatgacagaatctaataatgtgcacggtgtagccggcagagaaacaaacactgaggatctcttac ctaattatcacgagctggcagagctacaccatccacattgcaaattaaatcatagaacattgccgaggcgaatccataaa atagaaaatacccctgcaccacatcgacccgatagagccccctttcaaatgacgccagagctccatgatgccacagaagc tctaaggttcatcacggaacacttaaaagccgaggatgcgtacgatacggtaattgacgattggaagtatttagccagtg ttttggatcgacttttgttactgatatttctaacaataacgtttactgggacattgggaatactattccaagcacctcat attttggagtttgtagatcaagatcgaatactacaggagcttatggctaaatatacagcaaggtag |
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Protein
| Protein ID | pfu_aug2.0_476.1_20816.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_476.1_20816.t1 MDKNSDYNIYQIPPAIFKSSCEIDVKYFPFDEQVCEMKFGSWTFQADQLNFTYTKFRGLDLTDYLKSGTWDLVDCPARIE ICADENTKQAKALYIAQFRIRRKTLFYTVNLLIPCMLISFVSISVFLLPPDSCEKITLIISILLALVVFLLLISKMLPPS LTIPLIAKYLMFNFLMNIIAIGSTVFVINRNYRTARTHRMPKWTRVVFLNYLPRILFMKRPNHDDRWQKSNMSDITASKS SLDAHSRLDFDINDVRLDKERDTKHSKRPKRKTSDPENDITSNFRLSPEMAEANEAIAFMRRHLEWEDKYETVQDDWKYV ALVIDRLLLYIFLLVTVCGTLAILFHADGKYEVSYQSNILVSYDTLVYWIPPAIYKSSCTIDVEYFPFDEQICEMKFGSW TFTAEQLNFTFFNNMDSLDFTDYLKSGSWDIIKSPGKIDTIQDPMTGEKKALVIFQFVLRRKTLFYTVNLIIPCVLISFV SVCVFLLPADACEKITLCISVLLALVVFLLLISKILPPSKKIPLIANYMLFTFVMNILAICLTVFVINGNYRTPRTHRMP NWARTIFLYYLPQLLLMRRPNHNERWRKSKEEMTESNNVHGVAGRETNTEDLLPNYHELAELHHPHCKLNHRTLPRRIHK IENTPAPHRPDRAPFQMTPELHDATEALRFITEHLKAEDAYDTVIDDWKYLASVLDRLLLLIFLTITFTGTLGILFQAPH ILEFVDQDRILQELMAKYTAR |
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