Gene
| Gene Model ID | pfu_aug2.0_476.1_20817 |
|---|---|
| Locus | scaffold476.1 : 127053 ... 151125 : - |
| To GenomeBrowser | scaffold476.1:127053..151125 |
| Genes list of scaffold | scaffold476.1 |
| Synonym | pfu_aug1.0_2978.1_23137 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| acetylcholine receptor subunit beta-like 1 | GO:0005216 GO:0006811 GO:0016020 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_476.1_20817.t3 | 1 | 1 | Neur_chan_LBD | 20 | 228 | 0.0 | 216.7 | 0.0 | 0.0 | 216.1 |
| pfu_aug2.0_476.1_20817.t3 | 1 | 1 | Neur_chan_memb | 235 | 465 | 0.0 | 197.1 | 0.0 | 0.0 | 196.7 |
Transcript
| Transcript ID | pfu_aug2.0_476.1_20817.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_476.1_20817.t1 atgtcctccagggccctacccccagcagccatgctcttattctgggttgttatgaccgcagccatccaggaagcaagatt ggggagtgaggatgaagtgagacttgtccgagatttatttgagaggggttataacccattaatccgtccagtcaagaata tcagtgaatctatagaagtacaattcaatttggctctaagtcaacttattagcgtggatgagaaaaatcaagtaatgaag acaaatgtgtggctacagatgtattggaacgattatcagctacagtggaatcctaaggattatggcggtattagcacaat ccgtataagccacaataaagcttggagaccagatatagttctgtttaacaacgctgacgggacttacgaggtgagttacg agtctaacgttgttataggctctagttcccttatctattgggtacctcccgccatttacaaatcctcatgcaccattgat gtcaagtactttccatttgatgagcaaatttgtgagatgcattttggatcatggacgttcgacatcaaccagcttcactt ttccttctacgaaaatatgagggctctggaccttacggattacttgaagagtggaacatgggatattattgaattccctg tcgatatcgtcaatcatacagacttgtctaaaaacgaaacaaaatccatttacatagccaaattcaagttgagaaggaaa accctgttttacctcgtaaacctgatcattccttgtgtgttgatttcactggttagtgtgtgcgtgttcgcgttaccagc tgatgcaggggagaagatcacgctttgtatttccattttactggcccttgttgtgtttttgttacttatttcaaggtcat tacctcctgcccttacaattcctctcatttcaaagtttctgttgtttacatttatcatcaacataatcgccatcggatca actgtttttgtgataaatcagaacttccggacgccgagaactcatgatatgcctgtatggatacgcacaatctttctcaa acatttacccacaatactgctgatgcgccgtccaaatcatatcgagaggtatcacgcaacagataaaaagaaggaaaaag aagaaagcgccgaaaatgaaaataaaagcgaaatgaaccaactttgtaagaacctgttagaagagcaccttaaaaattgt gagattcataattctacaaaggatttatcaagtgcagctgtcttacagactgagtctttagaccctacatatcaaagggc agtaaatgctataaggttcatcaaaactcatttaaagaaagaggacgagtacgacacggtgatagatgattggaagtacg tggcaagtgtactggatcgtctcctccttgtagtcttcctgactgtgaccctatctggaacctttggcatattcttccag gcgccatacatatttgaccatattgatcaagatgaaattatagcaaagtattcaggataa |
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| Transcript ID | pfu_aug2.0_476.1_20817.t2 |
| Definition | - |
>pfu_aug2.0_476.1_20817.t2 atgacgtgctactgtttaatactggagatattcctcctcttaacgtctttgttgaaggcagtaacaggagcggagatgat gaaaggattggggagtgaggatgaagtgagacttgtccgagatttatttgagaggggttataacccattaatccgtccag tcaagaatatcagtgaatctatagaagtacaattcaatttggctctaagtcaacttattagcgtggatgagaaaaatcaa gtaatgaagacaaatgtgtggctacagatgtattggaacgattatcagctacagtggaatcctaaggattatggcggtat tagcacaatccgtataagccacaataaagcttggagaccagatatagttctgtttaacaacgctgacgggacttacgagg tgagttacgagtctaacgttgttataggctctagttcccttatctattgggtacctcccgccatttacaaatcctcatgc accattgatgtcaagtactttccatttgatgagcaaatttgtgagatgcattttggatcatggacgttcgacatcaacca gcttcacttttccttctacgaaaatatgagggctctggaccttacggattacttgaagagtggaacatgggatattattg aattccctgtcgatatcgtcaatcatacagacttgtctaaaaacgaaacaaaatccatttacatagccaaattcaagttg agaaggaaaaccctgttttacctcgtaaacctgatcattccttgtgtgttgatttcactggttagtgtgtgcgtgttcgc gttaccagctgatgcaggggagaagatcacgctttgtatttccattttactggcccttgttgtgtttttgttacttattt caaggtcattacctcctgcccttacaattcctctcatttcaaagtttctgttgtttacatttatcatcaacataatcgcc atcggatcaactgtttttgtgataaatcagaacttccggacgccgagaactcatgatatgcctgtatggatacgcacaat ctttctcaaacatttacccacaatactgctgatgcgccgtccaaatcatatcgagaggtatcacgcaacagataaaaaga aggaaaaagaagaaagcgccgaaaatgaaaataaaagcgaaatgaaccaactttgtaagaacctgttagaagagcacctt aaaaattgtgagattcataattctacaaaggatttatcaagtgcagctgtcttacagactgagtctttagaccctacata tcaaagggcagtaaatgctataaggttcatcaaaactcatttaaagaaagaggacgagtacgacacggtgatagatgatt ggaagtacgtggcaagtgtactggatcgtctcctccttgtagtcttcctgactgtgaccctatctggaacctttggcata ttcttccaggcgccatacatatttgaccatattgatcaagatgaaattatagcaaagtattcaggataa |
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| Transcript ID | pfu_aug2.0_476.1_20817.t3 |
| Definition | - |
>pfu_aug2.0_476.1_20817.t3 atgtttatgacgacatcctcggcagtatttcataaaggattggggagtgaggatgaagtgagacttgtccgagatttatt tgagaggggttataacccattaatccgtccagtcaagaatatcagtgaatctatagaagtacaattcaatttggctctaa gtcaacttattagcgtggatgagaaaaatcaagtaatgaagacaaatgtgtggctacagatgtattggaacgattatcag ctacagtggaatcctaaggattatggcggtattagcacaatccgtataagccacaataaagcttggagaccagatatagt tctgtttaacaacgctgacgggacttacgaggtgagttacgagtctaacgttgttataggctctagttcccttatctatt gggtacctcccgccatttacaaatcctcatgcaccattgatgtcaagtactttccatttgatgagcaaatttgtgagatg cattttggatcatggacgttcgacatcaaccagcttcacttttccttctacgaaaatatgagggctctggaccttacgga ttacttgaagagtggaacatgggatattattgaattccctgtcgatatcgtcaatcatacagacttgtctaaaaacgaaa caaaatccatttacatagccaaattcaagttgagaaggaaaaccctgttttacctcgtaaacctgatcattccttgtgtg ttgatttcactggttagtgtgtgcgtgttcgcgttaccagctgatgcaggggagaagatcacgctttgtatttccatttt actggcccttgttgtgtttttgttacttatttcaaggtcattacctcctgcccttacaattcctctcatttcaaagtttc tgttgtttacatttatcatcaacataatcgccatcggatcaactgtttttgtgataaatcagaacttccggacgccgaga actcatgatatgcctgtatggatacgcacaatctttctcaaacatttacccacaatactgctgatgcgccgtccaaatca tatcgagaggtatcacgcaacagataaaaagaaggaaaaagaagaaagcgccgaaaatgaaaataaaagcgaaatgaacc aactttgtaagaacctgttagaagagcaccttaaaaattgtgagattcataattctacaaaggatttatcaagtgcagct gtcttacagactgagtctttagaccctacatatcaaagggcagtaaatgctataaggttcatcaaaactcatttaaagaa agaggacgagtacgacacggtgatagatgattggaagtacgtggcaagtgtactggatcgtctcctccttgtagtcttcc tgactgtgaccctatctggaacctttggcatattcttccaggcgccatacatatttgaccatattgatcaagatgaaatt atagcaaagtattcaggataa |
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Protein
| Protein ID | pfu_aug2.0_476.1_20817.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_476.1_20817.t1 MSSRALPPAAMLLFWVVMTAAIQEARLGSEDEVRLVRDLFERGYNPLIRPVKNISESIEVQFNLALSQLISVDEKNQVMK TNVWLQMYWNDYQLQWNPKDYGGISTIRISHNKAWRPDIVLFNNADGTYEVSYESNVVIGSSSLIYWVPPAIYKSSCTID VKYFPFDEQICEMHFGSWTFDINQLHFSFYENMRALDLTDYLKSGTWDIIEFPVDIVNHTDLSKNETKSIYIAKFKLRRK TLFYLVNLIIPCVLISLVSVCVFALPADAGEKITLCISILLALVVFLLLISRSLPPALTIPLISKFLLFTFIINIIAIGS TVFVINQNFRTPRTHDMPVWIRTIFLKHLPTILLMRRPNHIERYHATDKKKEKEESAENENKSEMNQLCKNLLEEHLKNC EIHNSTKDLSSAAVLQTESLDPTYQRAVNAIRFIKTHLKKEDEYDTVIDDWKYVASVLDRLLLVVFLTVTLSGTFGIFFQ APYIFDHIDQDEIIAKYSG |
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| Protein ID | pfu_aug2.0_476.1_20817.t2 |
| Definition | - |
>pfu_aug2.0_476.1_20817.t2 MTCYCLILEIFLLLTSLLKAVTGAEMMKGLGSEDEVRLVRDLFERGYNPLIRPVKNISESIEVQFNLALSQLISVDEKNQ VMKTNVWLQMYWNDYQLQWNPKDYGGISTIRISHNKAWRPDIVLFNNADGTYEVSYESNVVIGSSSLIYWVPPAIYKSSC TIDVKYFPFDEQICEMHFGSWTFDINQLHFSFYENMRALDLTDYLKSGTWDIIEFPVDIVNHTDLSKNETKSIYIAKFKL RRKTLFYLVNLIIPCVLISLVSVCVFALPADAGEKITLCISILLALVVFLLLISRSLPPALTIPLISKFLLFTFIINIIA IGSTVFVINQNFRTPRTHDMPVWIRTIFLKHLPTILLMRRPNHIERYHATDKKKEKEESAENENKSEMNQLCKNLLEEHL KNCEIHNSTKDLSSAAVLQTESLDPTYQRAVNAIRFIKTHLKKEDEYDTVIDDWKYVASVLDRLLLVVFLTVTLSGTFGI FFQAPYIFDHIDQDEIIAKYSG |
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| Protein ID | pfu_aug2.0_476.1_20817.t3 |
| Definition | - |
>pfu_aug2.0_476.1_20817.t3 MFMTTSSAVFHKGLGSEDEVRLVRDLFERGYNPLIRPVKNISESIEVQFNLALSQLISVDEKNQVMKTNVWLQMYWNDYQ LQWNPKDYGGISTIRISHNKAWRPDIVLFNNADGTYEVSYESNVVIGSSSLIYWVPPAIYKSSCTIDVKYFPFDEQICEM HFGSWTFDINQLHFSFYENMRALDLTDYLKSGTWDIIEFPVDIVNHTDLSKNETKSIYIAKFKLRRKTLFYLVNLIIPCV LISLVSVCVFALPADAGEKITLCISILLALVVFLLLISRSLPPALTIPLISKFLLFTFIINIIAIGSTVFVINQNFRTPR THDMPVWIRTIFLKHLPTILLMRRPNHIERYHATDKKKEKEESAENENKSEMNQLCKNLLEEHLKNCEIHNSTKDLSSAA VLQTESLDPTYQRAVNAIRFIKTHLKKEDEYDTVIDDWKYVASVLDRLLLVVFLTVTLSGTFGIFFQAPYIFDHIDQDEI IAKYSG |
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