Gene
| Gene Model ID | pfu_aug2.0_476.1_20818 |
|---|---|
| Locus | scaffold476.1 : 158339 ... 172915 : - |
| To GenomeBrowser | scaffold476.1:158339..172915 |
| Genes list of scaffold | scaffold476.1 |
| Synonym | pfu_aug1.0_2978.1_23136 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| neuronal acetylcholine receptor subunit alpha-7 isoform x2 | GO:0006811 GO:0016020 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_476.1_20818.t1 | 1 | 1 | Neur_chan_LBD | 30 | 155 | 6.89439e-43 | 146.3 | 0.0 | 1.3004e-42 | 145.4 |
| pfu_aug2.0_476.1_20818.t1 | 1 | 1 | Neur_chan_memb | 152 | 357 | 1.3e-38 | 133.2 | 6.19934e-42 | 1.8e-38 | 132.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_476.1_20818.t1 | gi|759049366|ref|XP_011333736.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-7 isoform X2 [Cerapachys biroi] | 0.0 |
| pfu_aug2.0_476.1_20818.t1 | gi|751206612|ref|XP_011155834.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-7 [Solenopsis invicta] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_476.1_20818.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_476.1_20818.t1 atgagaagaaccagatactacactccaatatttggcttcagatgaaacattttggatgatataattttattatgcccact gctttttaagtattggcgagatgttaaccttgtatgggacccgaaagagtttggcggagtggaagaaattcgtgtacctg caaagaaagtctggaaaccagacatcttagtctataatagcgctgacgacgattttgatggtacattccacacaaacgtt atcatcaattatgacggacgttgtaaatggttgcctcctggtatgtttaaaagcacctgtcagatcgacatccgatggtt tccctttgacgaacagagatgtatcttaaagtttggatcttggacatacgacggacggtacctcgatctggtatttgacg acaaggaggagggcgatacttctgatttcatacggaatggagaatgggaactcattggagtcacgattctactgtctttg atggtattcctccttcttgttgctgaaacaatgcctccgacttctgacgccgtccctcttataggtatctacttctgctg tataatgataatgtgttccatgtctatgatgttcacggttatcgtccttaacttccattacagaggaccagactcgcata ttataccacgatggatcaaaaagtacataaacggatggttagcgtatctgttgctgatgaagaaaccagaaaggaagtgt aaagattcacagaaggacatgatagagcggtcgcggcagcgtgacgtcatggttcatgatcaccaatcaaggaatctgct gaacaccatgatggagacagacgacgaactgagacttgaaaacggaactgtactcacgtcgatcccgactcataacgaga caacatttaacgttgtaaattccaagcccgaacttttatctattctgaaagaattgaaaagaattacaaacaaatgtcgg cgagaggaagaagactttgaagtgagatgtgaatggcgatttgctgcaaccgtaattgaccgtttgtgtctatggatctg tataactttcactttactgtcaacacttgccgttttgttctcggcaccaacattaatcatcggttga |
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Protein
| Protein ID | pfu_aug2.0_476.1_20818.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_476.1_20818.t1 MRRTRYYTPIFGFRXNILDDIILLCPLLFKYWRDVNLVWDPKEFGGVEEIRVPAKKVWKPDILVYNSADDDFDGTFHTNV IINYDGRCKWLPPGMFKSTCQIDIRWFPFDEQRCILKFGSWTYDGRYLDLVFDDKEEGDTSDFIRNGEWELIGVTILLSL MVFLLLVAETMPPTSDAVPLIGIYFCCIMIMCSMSMMFTVIVLNFHYRGPDSHIIPRWIKKYINGWLAYLLLMKKPERKC KDSQKDMIERSRQRDVMVHDHQSRNLLNTMMETDDELRLENGTVLTSIPTHNETTFNVVNSKPELLSILKELKRITNKCR REEEDFEVRCEWRFAATVIDRLCLWICITFTLLSTLAVLFSAPTLIIG |
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