Gene
| Gene Model ID | pfu_aug2.0_476.1_20821 |
|---|---|
| Locus | scaffold476.1 : 215725 ... 239312 : + |
| To GenomeBrowser | scaffold476.1:215725..239312 |
| Genes list of scaffold | scaffold476.1 |
| Synonym | pfu_aug1.0_94924.1_42328 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_476.1_20821.t1 | 2 | 1 | LON | 112 | 411 | 2.2e-22 | 79.7 | 3.1e-25 | 2.2e-22 | 79.7 |
| pfu_aug2.0_476.1_20821.t1 | 1 | 1 | AAA_16 | 541 | 621 | 2.0e-07 | 31.1 | 6.4e-10 | 4.5e-07 | 30.0 |
| pfu_aug2.0_476.1_20821.t1 | 1 | 1 | AAA | 546 | 570 | 2.3e-06 | 27.8 | 1.2e-08 | 8.2e-06 | 26.0 |
| pfu_aug2.0_476.1_20821.t1 | 2 | 2 | LON | 605 | 644 | 2.2e-22 | 79.7 | 8.6 | 6100.0 | -3.4 |
| pfu_aug2.0_476.1_20821.t1 | 1 | 1 | Lon_C | 637 | 857 | 0.0 | 232.5 | 0.0 | 0.0 | 226.4 |
| pfu_aug2.0_476.1_20821.t1 | 1 | 1 | ChlI | 758 | 825 | 2.9e-09 | 36.4 | 1.1e-11 | 7.5e-09 | 35.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_476.1_20821.t1 | gi|391332514|ref|XP_003740679.1| | PREDICTED: lon protease homolog, mitochondrial [Metaseiulus occidentalis] | 0.0 |
| pfu_aug2.0_476.1_20821.t1 | gi|363743617|ref|XP_001232112.2| | PREDICTED: lon protease homolog, mitochondrial [Gallus gallus] | 0.0 |
| pfu_aug2.0_476.1_20821.t1 | gi|696997772|ref|XP_009565304.1| | PREDICTED: lon protease homolog, mitochondrial [Cuculus canorus] | 0.0 |
| pfu_aug2.0_476.1_20821.t1 | gi|507967493|ref|XP_004689373.1| | PREDICTED: LOW QUALITY PROTEIN: lon protease homolog, mitochondrial [Condylura cristata] | 0.0 |
| pfu_aug2.0_476.1_20821.t1 | gi|704558132|ref|XP_010181859.1| | PREDICTED: lon protease homolog, mitochondrial [Mesitornis unicolor] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_476.1_20821.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_476.1_20821.t1 atgggatgccagtttttgataataaatggacagcaagtgattcgtcatgatagaaaattacgtcaacagacagtgcgata cttacataataatggacctagggttctcagtagaacgtgttcttcaattttaagtcgcttgccattgttgaaaaaggatc cagtgatacgcatacctgctggcattcagtctgttctatgtagaaagtacagtgaaggaccgccaggcagctgggatgga caagggggagacaacccacccggtggatttgtacctcttgcagataacactcgtaaatcactagcaccagtcactgttcc agagtattttccaaatgtgccagttatttcaattagcaagaatcctgtttatcctaaatttgttaaaatgatagaggtat ctgacaaggatttgatatcattaatccaaaggaaagttagattaggacagccatatgcaggcgtgtttatgaagaaagat gaaggagatgaatctgaggtagcgagcagcctagatggtatccatgatgtgggtgtgtttgtccagatcgccgagatgat ggaccacggggaaaagctacatctatacgttgtagcacatcgattaatacggatcaatagacttttgaatgaagatgaag acatagatccccttcagcaagaaataaacaatttatcagacaaactggcagctagctatccgtctagaagacaaaggaga cgtaggaacaataatggaagtccagaggtcattcaggtcgactcggtgcagacgacagctgaaggtgccgagaatataca gtctgaggttaatggtaatactacaacacaaactgaaggtcaacctgagggagaggccaaggacatatctacaacacaaa ctgaaggtcaacctggcataccagagggagaggtcaaggacgtatctaggactaaggttctgatggtggaaactaacaac tacatgcatgagccctatgagaatgatgatatgatgaaggcactcacctcagaagtaatcaaaacaattaaagacatagt gaccatgaatgccttattcagagaaaatgttggaatgattttgaaccctgtcaataaagtatttgataatcccatcttca tttgtaaccttggtgcaatgttatcatctgccgaccctaaagaacaacaagaagtcttggaagagcgcaatattcccaac aaactatcacttgtgcttaacatgctgaaaaaggaatatgagagatgtaaaattcagaaaacgattggggaagaggtgga gaaaaaaatacgagaaaagaacagagaatttatgctgaaagaacaactgaaagtaataaagaaagaattaggaatgcaga aagatgaaggtgcttcactgaaagaaaaatacctagacagattaaaggataagactgtaccagaggttgtacagaaggtg atagatgaggagatggacagactgtcgtacctggacggagaatcctcagaatttaaatcattatggcatgaaggatgtca aagacagaatactggtatggtatcatttatactgtcttgtatagaaggtcagaggtcaaaggtcaaggagtttatagctg tgagtcagttgaagggagacacacagggtaaaatcatgtgtttccatggacctcctggtgttggtaaaactagtatagcc aaatcaatagctagggccatcaacagagagaaatacctgatgccccaagctttagaacacagcggtttgaaggaggaaca gatttctatatcagatgatgccctgaggactctgatacaccagtactgtagggagagtggagtcagaaatctacagaaaa aaatagaaaaaatttatagaaaagttgccttcaagatagtgcaagaagaacctactgaaaaagtagatgtgacaacagac aacttgaatgactttgtgggtaatccaatatacacactggagagattataccaaaccacaccaccaggtgtcgtcactgg gctggcgtggactgcagctggtggcagtcctttgtatatagaggttgttaagtatgacagtgtccctgtgaaggcaccag agacaggggtgacaactgatacccttccaacaggaactggaggtctgcaggtgacaggaaaccttaaagacgttatgaag gagagtacaactatagcttatacatacgccatgtcctggcttcaacaaaacaaaccagacaatcatttctttaggacgtc aaaacttcatctgcattttcctgagggagctacacctaaagatggacctagtgcaggaagtgccataacaacagcgttac tgtccctggcgatggatcagccgtgtagacaggacatggctatgactggggaaatctcccttactggcaaggtgctccgg atcggaggtgtcaaggaaaaagtgctggctgctcgaagagagggaatcaagactgtgattatgccatttgaaaacaaacc tgactttgaggaactagagtcgtttattaaggaaggacttaatgtgcactttgtcaaacattataatgatgtctttgaaa ttgccttctcggaaagtaatgattcacataacagaaattcagaaagagtcagcatgtag |
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Protein
| Protein ID | pfu_aug2.0_476.1_20821.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_476.1_20821.t1 MGCQFLIINGQQVIRHDRKLRQQTVRYLHNNGPRVLSRTCSSILSRLPLLKKDPVIRIPAGIQSVLCRKYSEGPPGSWDG QGGDNPPGGFVPLADNTRKSLAPVTVPEYFPNVPVISISKNPVYPKFVKMIEVSDKDLISLIQRKVRLGQPYAGVFMKKD EGDESEVASSLDGIHDVGVFVQIAEMMDHGEKLHLYVVAHRLIRINRLLNEDEDIDPLQQEINNLSDKLAASYPSRRQRR RRNNNGSPEVIQVDSVQTTAEGAENIQSEVNGNTTTQTEGQPEGEAKDISTTQTEGQPGIPEGEVKDVSRTKVLMVETNN YMHEPYENDDMMKALTSEVIKTIKDIVTMNALFRENVGMILNPVNKVFDNPIFICNLGAMLSSADPKEQQEVLEERNIPN KLSLVLNMLKKEYERCKIQKTIGEEVEKKIREKNREFMLKEQLKVIKKELGMQKDEGASLKEKYLDRLKDKTVPEVVQKV IDEEMDRLSYLDGESSEFKSLWHEGCQRQNTGMVSFILSCIEGQRSKVKEFIAVSQLKGDTQGKIMCFHGPPGVGKTSIA KSIARAINREKYLMPQALEHSGLKEEQISISDDALRTLIHQYCRESGVRNLQKKIEKIYRKVAFKIVQEEPTEKVDVTTD NLNDFVGNPIYTLERLYQTTPPGVVTGLAWTAAGGSPLYIEVVKYDSVPVKAPETGVTTDTLPTGTGGLQVTGNLKDVMK ESTTIAYTYAMSWLQQNKPDNHFFRTSKLHLHFPEGATPKDGPSAGSAITTALLSLAMDQPCRQDMAMTGEISLTGKVLR IGGVKEKVLAARREGIKTVIMPFENKPDFEELESFIKEGLNVHFVKHYNDVFEIAFSESNDSHNRNSERVSM |
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