Gene
Gene Model ID | pfu_aug2.0_48.1_26729 |
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Locus | scaffold48.1 : 22096 ... 39182 : + |
To GenomeBrowser | scaffold48.1:22096..39182 |
Genes list of scaffold | scaffold48.1 |
Synonym | NA |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_48.1_26729.t1 | 3 | 1 | 7tm_1 | 18 | 47 | 4.30058e-42 | 144.0 | 0.063 | 190.0 | 1.0 |
pfu_aug2.0_48.1_26729.t1 | 2 | 1 | 7TM_GPCR_Srw | 41 | 165 | 1.0e-05 | 24.8 | 0.037 | 110.0 | 1.7 |
pfu_aug2.0_48.1_26729.t1 | 2 | 1 | 7TM_GPCR_Srx | 42 | 177 | 5.4e-06 | 25.7 | 1.8e-09 | 5.4e-06 | 25.7 |
pfu_aug2.0_48.1_26729.t1 | 2 | 1 | 7TM_GPCR_Srsx | 45 | 165 | 2.9e-07 | 29.9 | 1.5e-06 | 0.0044 | 16.2 |
pfu_aug2.0_48.1_26729.t1 | 3 | 2 | 7tm_1 | 50 | 166 | 4.30058e-42 | 144.0 | 1.7e-33 | 5.0e-30 | 104.4 |
pfu_aug2.0_48.1_26729.t1 | 2 | 2 | 7TM_GPCR_Srsx | 96 | 265 | 2.9e-07 | 29.9 | 3.2e-07 | 0.00096 | 18.3 |
pfu_aug2.0_48.1_26729.t1 | 3 | 3 | 7tm_1 | 176 | 251 | 4.30058e-42 | 144.0 | 5.2e-16 | 1.5e-12 | 47.1 |
pfu_aug2.0_48.1_26729.t1 | 2 | 2 | 7TM_GPCR_Srw | 180 | 267 | 1.0e-05 | 24.8 | 3.4e-09 | 1.0e-05 | 24.8 |
pfu_aug2.0_48.1_26729.t1 | 2 | 2 | 7TM_GPCR_Srx | 230 | 254 | 5.4e-06 | 25.7 | 0.26 | 770.0 | -1.1 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_48.1_26729.t1 | gi|676431515|ref|XP_009046277.1| | hypothetical protein LOTGIDRAFT_110888 [Lottia gigantea] | 7.00649e-45 |
pfu_aug2.0_48.1_26729.t1 | gi|115613049|ref|XP_001200425.1| | PREDICTED: substance-P receptor [Strongylocentrotus purpuratus] | 4.0e-34 |
pfu_aug2.0_48.1_26729.t1 | gi|694647714|ref|XP_009481032.1| | PREDICTED: prolactin-releasing peptide receptor-like, partial [Pelecanus crispus] | 8.0e-33 |
pfu_aug2.0_48.1_26729.t1 | gi|260812114|ref|XP_002600766.1| | hypothetical protein BRAFLDRAFT_83509 [Branchiostoma floridae] | 8.0e-29 |
Transcript
Transcript ID | pfu_aug2.0_48.1_26729.t1 |
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Definition | - |
>pfu_aug2.0_48.1_26729.t1 atggatgcacgggtaacaagcggtcaacttttagatgaatatgggtgtcctgtacacgctatgacatatccggattatac acagatctcatcagtgtatgttactttgattatgttctacatacttgtaattatactggcgatttttggaaacattttgg tgatatggactatttggagaaattcccacatgcacaccgtaacgaactactacatcgtgaatctggcattgtcggactta cttgtctcccttattgccatgcctttgaagttgatggaatacacaacaccttgcaaatggagaatatttagcagtgatgc actttgttcctttctttattatattttgcctattttcgtttttacaagtatatttacattggttgccatttccattgaaa gatactacgccatcgtttatccactatcagcaatgaaagtgaacagtaaatccaggactaggaagataatcgccgctaca tggatcatccctattgtaccaatcattactgagcagccacagcaatgtaccagggaaaacaagaggagatatgaaatcaa caagcggaaggttgcgagaatggttattgttgttgcaatagctttcatactttcatggtcgccacaattcttcgtcagca tcgtaagtcaacatcagaagaatagcttccttcacaaacaggacttctttttcaccatgcttatgacacacctattcgga ttcattaacagctgtgttaatcctttcatatacactgcaatgagtgagaaattcaggaaaagtttcagaagaacgcttaa aaggcttcttttctgtaacgtatgccgctgtcaccaacgctaccgtgccgggagtatatttcagcgccggtctacgggtg tgacgtcagcaactcgctctttcattgacccggaagaggaaccgctacaacttggtcgcggaaatagaacgagtcatgct caaagcaacagacaaagctccagtagcgactcatcctcaaagatagatccgagggtgtattattcgactgataaggaaaa cctttatatagataggtataagatagatcaatcatctgatttgtacaaccgatttcatgattctgtgtatacatgcagca aaagagctgagtttcaaagtgattccgattatgcctcatctgagagagtactcctcggtgaaggcgtagtagatgccatt acggcgtattctatcggggaaaataaggaagcatatgaaaatccatctactactggaatgacaaattttcatgccgagtc aaatacatttcaagttgattctgtatag |
Protein
Protein ID | pfu_aug2.0_48.1_26729.t1 |
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Definition | - |
>pfu_aug2.0_48.1_26729.t1 MDARVTSGQLLDEYGCPVHAMTYPDYTQISSVYVTLIMFYILVIILAIFGNILVIWTIWRNSHMHTVTNYYIVNLALSDL LVSLIAMPLKLMEYTTPCKWRIFSSDALCSFLYYILPIFVFTSIFTLVAISIERYYAIVYPLSAMKVNSKSRTRKIIAAT WIIPIVPIITEQPQQCTRENKRRYEINKRKVARMVIVVAIAFILSWSPQFFVSIVSQHQKNSFLHKQDFFFTMLMTHLFG FINSCVNPFIYTAMSEKFRKSFRRTLKRLLFCNVCRCHQRYRAGSIFQRRSTGVTSATRSFIDPEEEPLQLGRGNRTSHA QSNRQSSSSDSSSKIDPRVYYSTDKENLYIDRYKIDQSSDLYNRFHDSVYTCSKRAEFQSDSDYASSERVLLGEGVVDAI TAYSIGENKEAYENPSTTGMTNFHAESNTFQVDSV |