Gene
| Gene Model ID | pfu_aug2.0_48.1_26738 |
|---|---|
| Locus | scaffold48.1 : 206150 ... 206948 : - |
| To GenomeBrowser | scaffold48.1:206150..206948 |
| Genes list of scaffold | scaffold48.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_48.1_26738.t1 | 1 | 1 | TIR | 8 | 122 | 2.4e-20 | 72.3 | 5.8e-24 | 2.9e-20 | 72.1 |
| pfu_aug2.0_48.1_26738.t1 | 1 | 1 | TIR_2 | 9 | 98 | 6.5e-12 | 45.4 | 1.6e-15 | 7.7e-12 | 45.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_48.1_26738.t1 | gi|260836647|ref|XP_002613317.1| | hypothetical protein BRAFLDRAFT_57373 [Branchiostoma floridae] | 2.0e-11 |
| pfu_aug2.0_48.1_26738.t1 | gi|704297873|ref|XP_010161908.1| | PREDICTED: toll-like receptor 13, partial [Caprimulgus carolinensis] | 1.0e-10 |
| pfu_aug2.0_48.1_26738.t1 | gi|260786550|ref|XP_002588320.1| | hypothetical protein BRAFLDRAFT_224551 [Branchiostoma floridae] | 7.0e-10 |
| pfu_aug2.0_48.1_26738.t1 | gi|686608393|ref|XP_009280773.1| | PREDICTED: LOW QUALITY PROTEIN: toll-like receptor 13, partial [Aptenodytes forsteri] | 1.0e-09 |
Transcript
| Transcript ID | pfu_aug2.0_48.1_26738.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_48.1_26738.t1 atggaagacaaagaatatgacgtgtttgttgtccattgtaacaactcagatgacaacaactttgtacaaaataacctgat gccatggctgagacaacagaatctgaaaacgttcctgtcggacgaagacctacatccaggatcggagatacttcctggga taacaaggggaatacatcagtcgaggaagactttgacactgctgacggaggagtctttaaaaagccagtggtgcacgttt gagatcatcgtggcatttgagaaagcacaaagggagaatcaaatgtccgttattctgttactcaaaggagtggacaagga aaaggtaagggtgctacatttagtcttttacaacgctatatttacatatgcccattcatttatatag |
|
Protein
| Protein ID | pfu_aug2.0_48.1_26738.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_48.1_26738.t1 MEDKEYDVFVVHCNNSDDNNFVQNNLMPWLRQQNLKTFLSDEDLHPGSEILPGITRGIHQSRKTLTLLTEESLKSQWCTF EIIVAFEKAQRENQMSVILLLKGVDKEKVRVLHLVFYNAIFTYAHSFI |
|