Gene
Gene Model ID | pfu_aug2.0_48.1_26738 |
---|---|
Locus | scaffold48.1 : 206150 ... 206948 : - |
To GenomeBrowser | scaffold48.1:206150..206948 |
Genes list of scaffold | scaffold48.1 |
Synonym | NA |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_48.1_26738.t1 | 1 | 1 | TIR | 8 | 122 | 2.4e-20 | 72.3 | 5.8e-24 | 2.9e-20 | 72.1 |
pfu_aug2.0_48.1_26738.t1 | 1 | 1 | TIR_2 | 9 | 98 | 6.5e-12 | 45.4 | 1.6e-15 | 7.7e-12 | 45.2 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_48.1_26738.t1 | gi|260836647|ref|XP_002613317.1| | hypothetical protein BRAFLDRAFT_57373 [Branchiostoma floridae] | 2.0e-11 |
pfu_aug2.0_48.1_26738.t1 | gi|704297873|ref|XP_010161908.1| | PREDICTED: toll-like receptor 13, partial [Caprimulgus carolinensis] | 1.0e-10 |
pfu_aug2.0_48.1_26738.t1 | gi|260786550|ref|XP_002588320.1| | hypothetical protein BRAFLDRAFT_224551 [Branchiostoma floridae] | 7.0e-10 |
pfu_aug2.0_48.1_26738.t1 | gi|686608393|ref|XP_009280773.1| | PREDICTED: LOW QUALITY PROTEIN: toll-like receptor 13, partial [Aptenodytes forsteri] | 1.0e-09 |
Transcript
Transcript ID | pfu_aug2.0_48.1_26738.t1 |
---|---|
Definition | - |
>pfu_aug2.0_48.1_26738.t1 atggaagacaaagaatatgacgtgtttgttgtccattgtaacaactcagatgacaacaactttgtacaaaataacctgat gccatggctgagacaacagaatctgaaaacgttcctgtcggacgaagacctacatccaggatcggagatacttcctggga taacaaggggaatacatcagtcgaggaagactttgacactgctgacggaggagtctttaaaaagccagtggtgcacgttt gagatcatcgtggcatttgagaaagcacaaagggagaatcaaatgtccgttattctgttactcaaaggagtggacaagga aaaggtaagggtgctacatttagtcttttacaacgctatatttacatatgcccattcatttatatag |
Protein
Protein ID | pfu_aug2.0_48.1_26738.t1 |
---|---|
Definition | - |
>pfu_aug2.0_48.1_26738.t1 MEDKEYDVFVVHCNNSDDNNFVQNNLMPWLRQQNLKTFLSDEDLHPGSEILPGITRGIHQSRKTLTLLTEESLKSQWCTF EIIVAFEKAQRENQMSVILLLKGVDKEKVRVLHLVFYNAIFTYAHSFI |