Gene
| Gene Model ID | pfu_aug2.0_48.1_26740 |
|---|---|
| Locus | scaffold48.1 : 230359 ... 243373 : + |
| To GenomeBrowser | scaffold48.1:230359..243373 |
| Genes list of scaffold | scaffold48.1 |
| Synonym | pfu_aug1.0_7952.1_31493 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_48.1_26740.t1 | 4 | 1 | Sushi | 35 | 82 | 1.3e-23 | 83.0 | 0.12 | 210.0 | 2.3 |
| pfu_aug2.0_48.1_26740.t1 | 4 | 2 | Sushi | 97 | 153 | 1.3e-23 | 83.0 | 4.3e-13 | 7.9e-10 | 38.9 |
| pfu_aug2.0_48.1_26740.t1 | 4 | 3 | Sushi | 159 | 226 | 1.3e-23 | 83.0 | 1.1e-11 | 2.0e-08 | 34.4 |
| pfu_aug2.0_48.1_26740.t1 | 4 | 4 | Sushi | 255 | 293 | 1.3e-23 | 83.0 | 3.2e-08 | 6.0e-05 | 23.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_48.1_26740.t1 | gi|676493842|ref|XP_009066368.1| | hypothetical protein LOTGIDRAFT_169832 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_48.1_26740.t1 | gi|524893497|ref|XP_005103261.1| | PREDICTED: uncharacterized protein LOC101855355 [Aplysia californica] | 0.0 |
| pfu_aug2.0_48.1_26740.t1 | gi|642919333|ref|XP_008191829.1| | PREDICTED: sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like [Tribolium castaneum] | 5.0e-19 |
| pfu_aug2.0_48.1_26740.t1 | gi|597736347|ref|XP_007230433.1| | PREDICTED: uncharacterized protein KIAA0247-like [Astyanax mexicanus] | 3.0e-18 |
| pfu_aug2.0_48.1_26740.t1 | gi|704242315|ref|XP_010145211.1| | PREDICTED: sushi domain-containing protein 4, partial [Eurypyga helias] | 1.0e-16 |
Transcript
| Transcript ID | pfu_aug2.0_48.1_26740.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_48.1_26740.t1 atgattcctttacaaacatgggctttgagtatatgtatgttgcagttggtagcttccaaagcagtggaaaatactggtaa agatgagtgtaacattccccgcttacagcattcagtgttacaccttaacactggtagccaaaccagtggtgtacagttct gttttaatggttactctctccacggtagtacaggcaaaatgaggtccttacatgtagaatgccgtaacaatagatggtac taccagggtactgaggaaagagtgaaggagtgctcagaggatgtgcgttgtcaagatccaccggttatagagcatgcctc taaacataattatgaatattaccatttctttgatggagacaaagtttattatgagtgtagtgaggggtaccagatgaata cagacacaacctatattacatgcaagaatgggcactgggtcggcgatacaccatactgcgagccaaagccaagctgtaat agacccccagagataagtcacgcccagtggatggtggacgagagtattttctatcctgaatttgaagccagctcgtttcc tgtaggatcacacgtccgttattcctgtatgaacacctacgcaagaacctataggatgtatggtaacccagtcattgaat gcatgtctaatggagagtggaccagtaaaccaatgtgcttaagtcctgaagaatctgcctactgtatactgcctaggata gagaatggagagtgtctgtgttatggtggggtagaggagtgtaccaggctcacagttggaagtagagtagaatgtacctg taatactggctatacactctcaggacagcagttcctcaaatgtcagggaaatacatggaaccatgtcaaccccttatgta ggatagatacagatgccatatccacagacagtacagaggagcctgggagaggtcacatgaacaccctggccatcgtagtg gctacagcatgtagtgtactagggctcttgttgttggtgatggtcattgttgtcttccgccgccgtaaacctcatcacca ccattccagactataccatccaggtattaacgcccctccataccagagggtccatagtggtcactttgatgaacatgata gaatggctttaataggttatgaatctgctagattgccttcctacgaggaggctacaaggaatcgtgctgcaggacagtca agtacgagggcaaatcaaggaggcagtgattatagacctctacctaacattccatcaaatatactcaatagtgttcagag tcataataacaataacaataacggtgtagataataccagcaggcattctgttataactaccagcacagttaacagagatg gagtatcagaggtgtttggctctatcgacactgttaacttcagtacatgtacagtcagtgatgcctccacggctgtgact gtggattctttagatagccgtacatcacgaccatcaaatggttcaggtacagccaccgcaggcagtctagagaacgtcag ctcagacaatgcccctttgctggagaattctgaacacgaggaagatgaaaacattgaaccctcctcaggtgatacagaga tctgctcagactcagatgacaaagaggctgtgtga |
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Protein
| Protein ID | pfu_aug2.0_48.1_26740.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_48.1_26740.t1 MIPLQTWALSICMLQLVASKAVENTGKDECNIPRLQHSVLHLNTGSQTSGVQFCFNGYSLHGSTGKMRSLHVECRNNRWY YQGTEERVKECSEDVRCQDPPVIEHASKHNYEYYHFFDGDKVYYECSEGYQMNTDTTYITCKNGHWVGDTPYCEPKPSCN RPPEISHAQWMVDESIFYPEFEASSFPVGSHVRYSCMNTYARTYRMYGNPVIECMSNGEWTSKPMCLSPEESAYCILPRI ENGECLCYGGVEECTRLTVGSRVECTCNTGYTLSGQQFLKCQGNTWNHVNPLCRIDTDAISTDSTEEPGRGHMNTLAIVV ATACSVLGLLLLVMVIVVFRRRKPHHHHSRLYHPGINAPPYQRVHSGHFDEHDRMALIGYESARLPSYEEATRNRAAGQS STRANQGGSDYRPLPNIPSNILNSVQSHNNNNNNGVDNTSRHSVITTSTVNRDGVSEVFGSIDTVNFSTCTVSDASTAVT VDSLDSRTSRPSNGSGTATAGSLENVSSDNAPLLENSEHEEDENIEPSSGDTEICSDSDDKEAV |
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