Gene
| Gene Model ID | pfu_aug2.0_48.1_26741 |
|---|---|
| Locus | scaffold48.1 : 243379 ... 249188 : - |
| To GenomeBrowser | scaffold48.1:243379..249188 |
| Genes list of scaffold | scaffold48.1 |
| Synonym | pfu_aug1.0_2938.1_08494 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_48.1_26741.t1 | 2 | 1 | Tetraspannin | 22 | 79 | 7.3e-16 | 58.1 | 0.015 | 110.0 | 1.8 |
| pfu_aug2.0_48.1_26741.t1 | 2 | 2 | Tetraspannin | 69 | 238 | 7.3e-16 | 58.1 | 9.9e-20 | 7.3e-16 | 58.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_48.1_26741.t1 | gi|694657572|ref|XP_009484511.1| | PREDICTED: peripherin-2 [Pelecanus crispus] | 7.0e-39 |
| pfu_aug2.0_48.1_26741.t1 | gi|701349337|ref|XP_009974580.1| | PREDICTED: peripherin-2 [Tyto alba] | 9.0e-39 |
| pfu_aug2.0_48.1_26741.t1 | gi|126310025|ref|XP_001362922.1| | PREDICTED: peripherin-2 isoform X1 [Monodelphis domestica] | 1.0e-38 |
| pfu_aug2.0_48.1_26741.t1 | gi|530623449|ref|XP_005301305.1| | PREDICTED: peripherin-2 [Chrysemys picta bellii] | 1.0e-38 |
| pfu_aug2.0_48.1_26741.t1 | gi|611996357|ref|XP_007483989.1| | PREDICTED: peripherin-2 isoform X2 [Monodelphis domestica] | 2.0e-38 |
Transcript
| Transcript ID | pfu_aug2.0_48.1_26741.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_48.1_26741.t1 atggcatggcctaaaatagaagtgtcagaaacagcacgatgcaagctggccaaggcctctggtgcattgaacatgattgc aattcctttttgcttgattttacttggaacgggcagttttatcgttgatgcaatgaaggacaaaatgaatttgatagaag gactgaacatggaagttctgccaggattcatgattacagtaggtcttctcggtgtaatttcatgtgcatttggagcaaaa atatcatcattggaagattcctttggtaggggtatctctgttgcaatgaccaagtataagtcacatgcgttcaccaaaac gcagctggatgaattacaaatagagtatagttgttgtggcagccagacatacacagattggttcaatatacaatggatcc atgacgaatatctctcaaatccaattaaagctgttgccaaaaaaaactctgccaagggtgaatacaccaatgatgatgtc cccttcagctgttgtgcatacacttcaatgagaccctgtatacaccatgacgtacatgacaacaagaagcactttagtta tgactacagaaccggtgtcactctacataccaggggctgtaaagatgcactcacagatctgtacgggaggaagattttag ctgaagttggagcaacagtttttgtcatatctgttgttgagctggctttggtcatcattatccgcatcctgcagacggca attgacagttctgtggaagcagacgacccagatgaaccgtctgtagcatatatattccctttcggacgaactgcaatgaa atcggtggcaaaaggcataaagaaataccacaaaggtaaaggtgatgacaaggcaacaacattaccattactagatgcac atggtcatgaaattgtagaagacgacgaccaaggcacagattccttctttgatgattccacatttgatacagtatcacaa gacagtgcggaagctaaccttgctaatgttgatgaacacatctatgaagagataacacagccattagacgatcactatgt tggcgagataacagaaccactagacgatcgctatgttggcgagataacagagccacatgacgatcgctatgttggaatgc caactgccagtcataatcaggaaatgaactcagttgaacgatctttattcaatggaagtaggatttaccaacaatctggg tcaatccccaacataccccctcctcctcctccccctcccgtgccagacttccaacttagtcatgtttatagtggcacaga accacagtatgcaaatatcccctattacagaggctctaatcaaagccatattgatgcacctcatggcagtggtttatatc ggactatacaatcacaaggctctatgacaaacgaaatgttccctgctcctccttcagggctcatcaggaccagtaaccaa agtatcaatgctcctccttcagggctcatcagggccggtaaccaaagtatcaatgctcctccttcagggctcatcaggga cagttaccaaagtatcaatgctcctccttcagggctcatcagggacaattaccaaagtatcaatgctcctccttcagggc tcatcagggacagttaccaaagtatcaatgaacaaggttcacggaggagtttaccatacacgtcacactag |
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Protein
| Protein ID | pfu_aug2.0_48.1_26741.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_48.1_26741.t1 MAWPKIEVSETARCKLAKASGALNMIAIPFCLILLGTGSFIVDAMKDKMNLIEGLNMEVLPGFMITVGLLGVISCAFGAK ISSLEDSFGRGISVAMTKYKSHAFTKTQLDELQIEYSCCGSQTYTDWFNIQWIHDEYLSNPIKAVAKKNSAKGEYTNDDV PFSCCAYTSMRPCIHHDVHDNKKHFSYDYRTGVTLHTRGCKDALTDLYGRKILAEVGATVFVISVVELALVIIIRILQTA IDSSVEADDPDEPSVAYIFPFGRTAMKSVAKGIKKYHKGKGDDKATTLPLLDAHGHEIVEDDDQGTDSFFDDSTFDTVSQ DSAEANLANVDEHIYEEITQPLDDHYVGEITEPLDDRYVGEITEPHDDRYVGMPTASHNQEMNSVERSLFNGSRIYQQSG SIPNIPPPPPPPPVPDFQLSHVYSGTEPQYANIPYYRGSNQSHIDAPHGSGLYRTIQSQGSMTNEMFPAPPSGLIRTSNQ SINAPPSGLIRAGNQSINAPPSGLIRDSYQSINAPPSGLIRDNYQSINAPPSGLIRDSYQSINEQGSRRSLPYTSH |
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