Gene
| Gene Model ID | pfu_aug2.0_48.1_26742 |
|---|---|
| Locus | scaffold48.1 : 249829 ... 289763 : + |
| To GenomeBrowser | scaffold48.1:249829..289763 |
| Genes list of scaffold | scaffold48.1 |
| Synonym | pfu_aug1.0_2938.1_08496 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_48.1_26742.t1 | 6 | 1 | TPR_2 | 151 | 172 | 2.7e-21 | 73.7 | 0.15 | 140.0 | 2.7 |
| pfu_aug2.0_48.1_26742.t1 | 7 | 1 | TPR_1 | 151 | 163 | 2.3e-17 | 61.7 | 4.1 | 3800.0 | -2.3 |
| pfu_aug2.0_48.1_26742.t1 | 6 | 1 | TPR_14 | 151 | 174 | 4.6e-11 | 42.3 | 0.41 | 380.0 | 2.2 |
| pfu_aug2.0_48.1_26742.t1 | 4 | 1 | TPR_12 | 151 | 171 | 1.6e-08 | 34.3 | 0.68 | 630.0 | 0.4 |
| pfu_aug2.0_48.1_26742.t1 | 6 | 1 | TPR_16 | 153 | 172 | 2.4e-17 | 63.0 | 3.5 | 3200.0 | -1.1 |
| pfu_aug2.0_48.1_26742.t1 | 6 | 1 | TPR_8 | 153 | 166 | 1.7e-10 | 39.8 | 8.1 | 7500.0 | -2.9 |
| pfu_aug2.0_48.1_26742.t1 | 4 | 1 | TPR_19 | 154 | 176 | 3.4e-11 | 43.3 | 0.046 | 43.0 | 4.5 |
| pfu_aug2.0_48.1_26742.t1 | 4 | 2 | TPR_19 | 154 | 228 | 3.4e-11 | 43.3 | 0.00035 | 0.33 | 11.3 |
| pfu_aug2.0_48.1_26742.t1 | 7 | 2 | TPR_1 | 170 | 188 | 2.3e-17 | 61.7 | 1.9 | 1800.0 | -1.2 |
| pfu_aug2.0_48.1_26742.t1 | 5 | 1 | TPR_11 | 177 | 226 | 6.1e-25 | 86.6 | 2.2e-08 | 2.0e-05 | 24.1 |
| pfu_aug2.0_48.1_26742.t1 | 6 | 1 | TPR_17 | 184 | 215 | 8.7e-08 | 31.7 | 0.39 | 360.0 | 1.7 |
| pfu_aug2.0_48.1_26742.t1 | 4 | 1 | Apc3 | 196 | 221 | 1.1e-10 | 41.5 | 0.0025 | 2.3 | 8.3 |
| pfu_aug2.0_48.1_26742.t1 | 6 | 2 | TPR_2 | 197 | 226 | 2.7e-21 | 73.7 | 9.5e-07 | 0.00088 | 19.0 |
| pfu_aug2.0_48.1_26742.t1 | 6 | 2 | TPR_8 | 197 | 226 | 1.7e-10 | 39.8 | 0.00043 | 0.4 | 10.5 |
| pfu_aug2.0_48.1_26742.t1 | 5 | 2 | TPR_11 | 198 | 255 | 6.1e-25 | 86.6 | 4.7e-08 | 4.4e-05 | 23.0 |
| pfu_aug2.0_48.1_26742.t1 | 6 | 2 | TPR_14 | 198 | 227 | 4.6e-11 | 42.3 | 0.00013 | 0.12 | 13.0 |
| pfu_aug2.0_48.1_26742.t1 | 4 | 2 | TPR_12 | 199 | 256 | 1.6e-08 | 34.3 | 0.00029 | 0.27 | 11.1 |
| pfu_aug2.0_48.1_26742.t1 | 7 | 3 | TPR_1 | 200 | 227 | 2.3e-17 | 61.7 | 1.5e-05 | 0.014 | 15.0 |
| pfu_aug2.0_48.1_26742.t1 | 6 | 2 | TPR_16 | 201 | 252 | 2.4e-17 | 63.0 | 7.4e-05 | 0.068 | 13.8 |
| pfu_aug2.0_48.1_26742.t1 | 6 | 3 | TPR_8 | 229 | 257 | 1.7e-10 | 39.8 | 0.11 | 99.0 | 3.0 |
| pfu_aug2.0_48.1_26742.t1 | 6 | 3 | TPR_2 | 230 | 255 | 2.7e-21 | 73.7 | 0.0027 | 2.5 | 8.2 |
| pfu_aug2.0_48.1_26742.t1 | 7 | 4 | TPR_1 | 230 | 255 | 2.3e-17 | 61.7 | 0.0017 | 1.6 | 8.4 |
| pfu_aug2.0_48.1_26742.t1 | 6 | 3 | TPR_14 | 230 | 253 | 4.6e-11 | 42.3 | 4.6 | 4300.0 | -1.1 |
| pfu_aug2.0_48.1_26742.t1 | 4 | 3 | TPR_12 | 235 | 291 | 1.6e-08 | 34.3 | 8.0e-05 | 0.074 | 12.9 |
| pfu_aug2.0_48.1_26742.t1 | 4 | 2 | Apc3 | 256 | 318 | 1.1e-10 | 41.5 | 3.7e-05 | 0.035 | 14.2 |
| pfu_aug2.0_48.1_26742.t1 | 6 | 2 | TPR_17 | 264 | 283 | 8.7e-08 | 31.7 | 0.32 | 300.0 | 2.0 |
| pfu_aug2.0_48.1_26742.t1 | 7 | 5 | TPR_1 | 265 | 296 | 2.3e-17 | 61.7 | 7.4e-07 | 0.00069 | 19.1 |
| pfu_aug2.0_48.1_26742.t1 | 6 | 4 | TPR_8 | 265 | 296 | 1.7e-10 | 39.8 | 4.5e-05 | 0.042 | 13.6 |
| pfu_aug2.0_48.1_26742.t1 | 5 | 3 | TPR_11 | 266 | 328 | 6.1e-25 | 86.6 | 1.5e-10 | 1.4e-07 | 31.0 |
| pfu_aug2.0_48.1_26742.t1 | 6 | 4 | TPR_2 | 266 | 296 | 2.7e-21 | 73.7 | 1.2e-06 | 0.0011 | 18.6 |
| pfu_aug2.0_48.1_26742.t1 | 6 | 4 | TPR_14 | 267 | 306 | 4.6e-11 | 42.3 | 0.00028 | 0.26 | 12.0 |
| pfu_aug2.0_48.1_26742.t1 | 6 | 3 | TPR_16 | 269 | 316 | 2.4e-17 | 63.0 | 5.5e-09 | 5.1e-06 | 27.0 |
| pfu_aug2.0_48.1_26742.t1 | 4 | 3 | TPR_19 | 273 | 332 | 3.4e-11 | 43.3 | 1.2e-08 | 1.1e-05 | 25.6 |
| pfu_aug2.0_48.1_26742.t1 | 6 | 3 | TPR_17 | 286 | 316 | 8.7e-08 | 31.7 | 0.0004 | 0.37 | 11.1 |
| pfu_aug2.0_48.1_26742.t1 | 7 | 6 | TPR_1 | 299 | 329 | 2.3e-17 | 61.7 | 0.069 | 64.0 | 3.3 |
| pfu_aug2.0_48.1_26742.t1 | 4 | 4 | TPR_12 | 301 | 357 | 1.6e-08 | 34.3 | 0.00069 | 0.64 | 9.9 |
| pfu_aug2.0_48.1_26742.t1 | 6 | 4 | TPR_16 | 302 | 359 | 2.4e-17 | 63.0 | 3.1e-09 | 2.8e-06 | 27.8 |
| pfu_aug2.0_48.1_26742.t1 | 6 | 5 | TPR_14 | 302 | 338 | 4.6e-11 | 42.3 | 0.00098 | 0.9 | 10.3 |
| pfu_aug2.0_48.1_26742.t1 | 6 | 5 | TPR_8 | 302 | 329 | 1.7e-10 | 39.8 | 0.055 | 51.0 | 3.9 |
| pfu_aug2.0_48.1_26742.t1 | 6 | 5 | TPR_2 | 303 | 330 | 2.7e-21 | 73.7 | 0.014 | 13.0 | 5.9 |
| pfu_aug2.0_48.1_26742.t1 | 4 | 3 | Apc3 | 312 | 380 | 1.1e-10 | 41.5 | 5.6e-05 | 0.052 | 13.6 |
| pfu_aug2.0_48.1_26742.t1 | 6 | 4 | TPR_17 | 322 | 350 | 8.7e-08 | 31.7 | 0.019 | 17.0 | 5.8 |
| pfu_aug2.0_48.1_26742.t1 | 5 | 4 | TPR_11 | 331 | 379 | 6.1e-25 | 86.6 | 7.2e-07 | 0.00067 | 19.2 |
| pfu_aug2.0_48.1_26742.t1 | 6 | 6 | TPR_2 | 332 | 364 | 2.7e-21 | 73.7 | 0.00064 | 0.6 | 10.1 |
| pfu_aug2.0_48.1_26742.t1 | 6 | 6 | TPR_14 | 332 | 364 | 4.6e-11 | 42.3 | 0.16 | 150.0 | 3.4 |
| pfu_aug2.0_48.1_26742.t1 | 7 | 7 | TPR_1 | 336 | 364 | 2.3e-17 | 61.7 | 0.01 | 9.6 | 6.0 |
| pfu_aug2.0_48.1_26742.t1 | 6 | 6 | TPR_8 | 338 | 357 | 1.7e-10 | 39.8 | 1.1 | 1000.0 | -0.1 |
| pfu_aug2.0_48.1_26742.t1 | 4 | 4 | TPR_19 | 344 | 380 | 3.4e-11 | 43.3 | 1.8 | 1700.0 | -0.6 |
| pfu_aug2.0_48.1_26742.t1 | 6 | 5 | TPR_17 | 354 | 380 | 8.7e-08 | 31.7 | 0.62 | 570.0 | 1.1 |
| pfu_aug2.0_48.1_26742.t1 | 6 | 5 | TPR_16 | 398 | 423 | 2.4e-17 | 63.0 | 1.5 | 1400.0 | 0.1 |
| pfu_aug2.0_48.1_26742.t1 | 4 | 4 | Apc3 | 591 | 628 | 1.1e-10 | 41.5 | 0.041 | 38.0 | 4.5 |
| pfu_aug2.0_48.1_26742.t1 | 5 | 5 | TPR_11 | 602 | 627 | 6.1e-25 | 86.6 | 0.75 | 690.0 | -0.1 |
| pfu_aug2.0_48.1_26742.t1 | 6 | 6 | TPR_17 | 602 | 628 | 8.7e-08 | 31.7 | 0.73 | 670.0 | 0.9 |
| pfu_aug2.0_48.1_26742.t1 | 6 | 6 | TPR_16 | 646 | 671 | 2.4e-17 | 63.0 | 1.5 | 1400.0 | 0.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_48.1_26742.t1 | gi|676471332|ref|XP_009059145.1| | hypothetical protein LOTGIDRAFT_218109 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_48.1_26742.t1 | gi|524907453|ref|XP_005108844.1| | PREDICTED: tetratricopeptide repeat protein 13-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_48.1_26742.t1 | gi|731211234|ref|XP_010620229.1| | PREDICTED: tetratricopeptide repeat protein 13 isoform X2 [Fukomys damarensis] | 0.0 |
| pfu_aug2.0_48.1_26742.t1 | gi|545494742|ref|XP_005618885.1| | PREDICTED: tetratricopeptide repeat protein 13 isoform X4 [Canis lupus familiaris] | 0.0 |
| pfu_aug2.0_48.1_26742.t1 | gi|512004354|ref|XP_004819651.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_48.1_26742.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_48.1_26742.t1 atgatgcatgatgacatggctcgtgtaactttcttgtttgtgttgactttacttgttccatctactaaacttgatccgat gtgcgatgttgcaaatgttcaggtagaaaatgaagatggaacattccaggtttttgaagtgaagcgacttgaaccggttg ttggagaaacttgcgttttctgttcgcagaaaccagtgaactctgtacccagaccaacccaactacgaaccaatgttttc atctctgcaggcgaagtttcaacgaaatgcgaatttcaagtagaggagctaccaattggactgtgttctagtctccgtga tcaaggacattgtacaaaggatgaacagtcctgtgaacatgatccagaggatttggcagaggacattgtcaaacagggat tgcttcccttagcatcaggagattatgaaaaggacaaagctgttgctgttggttttgtgcttctgaatatgggcagtctg gatgaggcaatgagcagatttactaagttactgaaggagatagcaaatgcagccaaaagtgtgagagaatttacagaggc tattatgcaaagtaaaaagttccatgaaccatatgaaagaagagctgagtcctatattgccctccatcattacgatgaag cactggatgaccttaataaagcagcagagacaagtccttctaaaagattatacttcatccgaggcattgtaaatctatta ttagagaattttgctgatgcagaaagagattttaaaaagacactggacagtgagagttccttatatctaccatcttactt tcaccttggtatagccctctactacaggggtaaaatcagaaatgctatagaagttttcaaggaagttttacagaataaac ctgaccatgtagatgcatccacaagtttagcccaagcttttagagagcttggtaatataaaggcagcatcacgtagattt aaccagtctgtccatatgaatcctcgacacgcccagactttacagctatgggggagccttctgtacactctgggagactt tggcaatgctttactcaaatttgatagatgtttacttatagattccaaaaatattaattgtcagtacatgaaagctttat ccctaattgctggaggaaggatatttaatggtttaaaatctgctaccaaggtaatggttcataatacacctgcaattaaa gcctcaccagattttatgaaggcccattatctcagggagtatgccagatacctccattcccatctcgatgatccattcct acagtttaatcctgatgaagatttagacggagattttaagaatagatggtcccgggaattaccttttgattttaaggata gttacaaagaacaacctggtttacaaccagaaatcaggggtcctacacagaatattaaagtcatgcaatactatgattta gtttttaaactgctgaaaaccatgctggaacattactcaggggaaggtacgatattttatccagagttacaagatgacat agaaaaagctaaaacgtgtgaagatctacttgttattgctaagaagagaaatataaatcagaatggttttatggtttcaa cacaagtaccatcttctcataaatccaaggagaatgatagattggagggatcaatgataactcttaccaaagatattgac aagaatttgatattttccatcaatatagccaatacaaagagtcggacgaagcagtatcacacagagatagatatggtctt caaccaacttcaggaagaaataaaaagaactggggtgcataaactattgagatgtttacttatagattccaaaaatatta attgtcagtacatgaaagctttatccctaattgctggaggaaggatatttaatggtttaaaatctgctaccaaggtaatg gttcacaacacacctgcaattaaagcctcaccagattttatgaaggcccattatctcagggagtatgccagatatctcca ttcccatctcgatgatccattcctacagtttaatcctgatgaagatttagatggagattttaagaatagatggtcccggg aattatcttttgattttaaggatagttacaaagaacaacctggtttacaaccagaaatcaggggtcctacacagaatatt aaagtcatgcaatactatgatttagtttttaaactgctgaaaactatgctggaacattactcaggggaaggtacgatatt ttatccagagttacaagatgacatagaaaaagctaaaacatgtgaagatttacttgttattgctaagagtacagattctg tattagataaagttttaacaatggcatattacttctacaatatgatgcctctcacacgggggaccagtgctgtggcatat tccgtagtggtgggacttgtaatgtcagttcacagagttgttaatggaaaaataccagctggaaagcttttagaaatgga ggccatactgtctggagctcctgatgcttttattctggtcaccaaaaactggatgaatgttaaaacataa |
|
Protein
| Protein ID | pfu_aug2.0_48.1_26742.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_48.1_26742.t1 MMHDDMARVTFLFVLTLLVPSTKLDPMCDVANVQVENEDGTFQVFEVKRLEPVVGETCVFCSQKPVNSVPRPTQLRTNVF ISAGEVSTKCEFQVEELPIGLCSSLRDQGHCTKDEQSCEHDPEDLAEDIVKQGLLPLASGDYEKDKAVAVGFVLLNMGSL DEAMSRFTKLLKEIANAAKSVREFTEAIMQSKKFHEPYERRAESYIALHHYDEALDDLNKAAETSPSKRLYFIRGIVNLL LENFADAERDFKKTLDSESSLYLPSYFHLGIALYYRGKIRNAIEVFKEVLQNKPDHVDASTSLAQAFRELGNIKAASRRF NQSVHMNPRHAQTLQLWGSLLYTLGDFGNALLKFDRCLLIDSKNINCQYMKALSLIAGGRIFNGLKSATKVMVHNTPAIK ASPDFMKAHYLREYARYLHSHLDDPFLQFNPDEDLDGDFKNRWSRELPFDFKDSYKEQPGLQPEIRGPTQNIKVMQYYDL VFKLLKTMLEHYSGEGTIFYPELQDDIEKAKTCEDLLVIAKKRNINQNGFMVSTQVPSSHKSKENDRLEGSMITLTKDID KNLIFSINIANTKSRTKQYHTEIDMVFNQLQEEIKRTGVHKLLRCLLIDSKNINCQYMKALSLIAGGRIFNGLKSATKVM VHNTPAIKASPDFMKAHYLREYARYLHSHLDDPFLQFNPDEDLDGDFKNRWSRELSFDFKDSYKEQPGLQPEIRGPTQNI KVMQYYDLVFKLLKTMLEHYSGEGTIFYPELQDDIEKAKTCEDLLVIAKSTDSVLDKVLTMAYYFYNMMPLTRGTSAVAY SVVVGLVMSVHRVVNGKIPAGKLLEMEAILSGAPDAFILVTKNWMNVKT |
|