Gene
| Gene Model ID | pfu_aug2.0_480.1_00805 |
|---|---|
| Locus | scaffold480.1 : 249585 ... 265943 : - |
| To GenomeBrowser | scaffold480.1:249585..265943 |
| Genes list of scaffold | scaffold480.1 |
| Synonym | pfu_aug1.0_1146.1_58379 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| vesicle-associated membrane protein 1 | GO:0005739 GO:0009986 GO:0016021 GO:0035493 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_480.1_00805.t4 | 2 | 1 | Synaptobrevin | 27 | 108 | 5.1e-34 | 115.7 | 2.8e-37 | 5.1e-34 | 115.7 |
| pfu_aug2.0_480.1_00805.t4 | 2 | 2 | Synaptobrevin | 111 | 128 | 5.1e-34 | 115.7 | 0.42 | 780.0 | -0.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_480.1_00805.t4 | gi|507697278|ref|XP_004643613.1| | PREDICTED: vesicle-associated membrane protein 1 isoform X1 [Octodon degus] | 1.0e-38 |
Transcript
| Transcript ID | pfu_aug2.0_480.1_00805.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_480.1_00805.t1 atgtacaatagggcatttttccatgcctggtctaaccctggaggcccaggagggcccgggcagcctgcccagccaagtaa acgactacagcaaacccaggcccaagttgatgaggttgtggacattatgagggtcaatgtggataaagtattagagaggg accagaaaatctccgaattagatgatagagctgatgcattacaagctggagcatctcagtttgaggcaacatcaggaaaa cttaaacggaaatactggtggaaaaattgcaagatgtggattatactgattagtataatacttgtcatcattataattat cgtagtttgggcagttacaagtcagaaaagtgacagtggaaaatag |
|
| Transcript ID | pfu_aug2.0_480.1_00805.t2 |
| Definition | - |
>pfu_aug2.0_480.1_00805.t2 atgtacaatagggcatttttccatgcctggtctaaccctggaggcccaggagggcccgggcagcctgcccagccaagtaa acgactacagcaaacccaggcccaagttgatgaggttgtggacattatgagggtcaatgtggataaagtattagagaggg accagaaaatctccgaattagatgatagagctgatgcattacaagctggagcatctcagtttgaggcaacatcaggaaaa cttaaacggaaatactggtggaaaaattgcaagatgtggattatactgattagtataatacttgtcatcattataattat cgtaggtacaggtttcctgggtagcatccacctatggctaatagcttggacattttgggcagttacaagtcagaaaagtg acagtggaaaatag |
|
| Transcript ID | pfu_aug2.0_480.1_00805.t3 |
| Definition | - |
>pfu_aug2.0_480.1_00805.t3 atgtacaatagggcatttttccatgcctggtctaaccctggaggcccaggagggcccgggcagcctgcccagccaagtaa acgactacagcaaacccaggcccaagttgatgaggttgtggacattatgagggtcaatgtggataaagtattagagaggg accagaaaatctccgaattagatgatagagctgatgcattacaagctggagcatctcagtttgaggcaacatcaggaaaa cttaaacggaaatactggtggaaaaattgcaagatgatgataattttgggtgttataattggcattatcgttatcataat catcgagagtcagatgtggattatactgattagtataatacttgtcatcattataattatcgtaggtacaggtttcctgg gtagcatccacctatggctaatagcttggacattttgggcagttacaagtcagaaaagtgacagtggaaaatag |
|
| Transcript ID | pfu_aug2.0_480.1_00805.t4 |
| Definition | - |
>pfu_aug2.0_480.1_00805.t4 atgtacaatagggcatttttccatgcctggtctaaccctggaggcccaggagggcccgggcagcctgcccagccaagtaa acgactacagcaaacccaggcccaagttgatgaggttgtggacattatgagggtcaatgtggataaagtattagagaggg accagaaaatctccgaattagatgatagagctgatgcattacaagctggagcatctcagtttgaggcaacatcaggaaaa cttaaacggaaatactggtggaaaaattgcaagatgatgataattttgggtgttataattggcattatcgttatcataat catcgagagtcagatgtggattatactgattagtataatacttgtcatcattataattatcgtaggtacaggtttcctgg gtagcatccacctatggctaatagcttggacataaatgcacgggtcaaaatttatgttcctgtatgacctcacatgtaac tattggttactttacaaacttgggtgtactccaaatacggtggctaagtttgggcagttacaagtcagaaaagtgacagt ggaaaataggagagattttcctgggatttctttttgtgtagaatcttatgtactagatgtaccatttagctgtacagaga gaattataaacgtgatcaacattttcctggaatggacgcacggacagacattcaagttccattttcttcaccattccgtt gtgcgatattttttctttatgatgacatttcagatctatacttga |
|
Protein
| Protein ID | pfu_aug2.0_480.1_00805.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_480.1_00805.t1 MYNRAFFHAWSNPGGPGGPGQPAQPSKRLQQTQAQVDEVVDIMRVNVDKVLERDQKISELDDRADALQAGASQFEATSGK LKRKYWWKNCKMWIILISIILVIIIIIVVWAVTSQKSDSGK |
|
| Protein ID | pfu_aug2.0_480.1_00805.t2 |
| Definition | - |
>pfu_aug2.0_480.1_00805.t2 MYNRAFFHAWSNPGGPGGPGQPAQPSKRLQQTQAQVDEVVDIMRVNVDKVLERDQKISELDDRADALQAGASQFEATSGK LKRKYWWKNCKMWIILISIILVIIIIIVGTGFLGSIHLWLIAWTFWAVTSQKSDSGK |
|
| Protein ID | pfu_aug2.0_480.1_00805.t3 |
| Definition | - |
>pfu_aug2.0_480.1_00805.t3 MYNRAFFHAWSNPGGPGGPGQPAQPSKRLQQTQAQVDEVVDIMRVNVDKVLERDQKISELDDRADALQAGASQFEATSGK LKRKYWWKNCKMMIILGVIIGIIVIIIIESQMWIILISIILVIIIIIVGTGFLGSIHLWLIAWTFWAVTSQKSDSGK |
|
| Protein ID | pfu_aug2.0_480.1_00805.t4 |
| Definition | - |
>pfu_aug2.0_480.1_00805.t4 MYNRAFFHAWSNPGGPGGPGQPAQPSKRLQQTQAQVDEVVDIMRVNVDKVLERDQKISELDDRADALQAGASQFEATSGK LKRKYWWKNCKMMIILGVIIGIIVIIIIESQMWIILISIILVIIIIIVGTGFLGSIHLWLIAWTXMHGSKFMFLYDLTCN YWLLYKLGCTPNTVAKFGQLQVRKVTVENRRDFPGISFCVESYVLDVPFSCTERIINVINIFLEWTHGQTFKFHFLHHSV VRYFFFMMTFQIYT |
|