Gene
| Gene Model ID | pfu_aug2.0_481.1_04240 |
|---|---|
| Locus | scaffold481.1 : 231199 ... 247265 : - |
| To GenomeBrowser | scaffold481.1:231199..247265 |
| Genes list of scaffold | scaffold481.1 |
| Synonym | pfu_aug1.0_42415.1_27007 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_481.1_04240.t1 | 6 | 1 | WD40 | 128 | 160 | 5.2e-21 | 73.6 | 3.1e-08 | 0.00011 | 21.8 |
| pfu_aug2.0_481.1_04240.t1 | 6 | 2 | WD40 | 166 | 217 | 5.2e-21 | 73.6 | 1.7e-12 | 6.4e-09 | 35.3 |
| pfu_aug2.0_481.1_04240.t1 | 6 | 3 | WD40 | 231 | 258 | 5.2e-21 | 73.6 | 0.0034 | 13.0 | 5.9 |
| pfu_aug2.0_481.1_04240.t1 | 6 | 4 | WD40 | 263 | 297 | 5.2e-21 | 73.6 | 0.00073 | 2.7 | 8.0 |
| pfu_aug2.0_481.1_04240.t1 | 6 | 5 | WD40 | 366 | 381 | 5.2e-21 | 73.6 | 1.8 | 6800.0 | -2.8 |
| pfu_aug2.0_481.1_04240.t1 | 6 | 6 | WD40 | 418 | 439 | 5.2e-21 | 73.6 | 0.29 | 1100.0 | -0.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_481.1_04240.t1 | gi|676443071|ref|XP_009050001.1| | hypothetical protein LOTGIDRAFT_231111 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_481.1_04240.t1 | gi|260793344|ref|XP_002591672.1| | hypothetical protein BRAFLDRAFT_80761 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_481.1_04240.t1 | gi|585695199|ref|XP_006821974.1| | PREDICTED: pre-mRNA-splicing factor PRP46-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_481.1_04240.t1 | gi|390366347|ref|XP_785533.3| | PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_481.1_04240.t1 | gi|156373953|ref|XP_001629574.1| | predicted protein [Nematostella vectensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_481.1_04240.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_481.1_04240.t1 atgaatattgtagatatttcaaacatcgaagtaacagtagtgacaaatgcagatgaagaagatgatattgtgaatgtaga tatagatgaagatgacgttgacataaacgtagccgtaacaacgcaagaagaagtgaccataaataatgacccttctcagg gggagacaactgagaaaaatctaagtaactccagtgatcctataagatttgatgtttccccaggagaacctctgcatcag gccaatacacaaccacctaccaagaaagagaaagtccagaaagctacgaagaaaaatactaaagaaacaaaggtatcaga aaaggctgtagacaaagacaggaatctgtccaatccatggagaacaaaagtcttttctgtttttgaacttgaggggcaca acgatttagttacagctgcagatataaggaagacaactcttgttactgcaagtcgtgacaccactatcaggacttgggac attgtgaagaggcaggaaattagaagctatggtggccatactggaactgttacttgtgttgtgttgttatctgaggatga ctccaaatctatagggaagtttctagagaccgaggcagagggttctctgatcattagtggatccactgactgtagtgtga agatatggtcagcagaaactggtgagattttacgatcaacctacacgtacaatcctgtcaccaggttggtgtatcaccca gtggcacaggctgtgctcactgcatcagatggaggtaaaattgatgtatggaatgttgagtctggagaaaatgtacagag cctcagagcatttgatgactgtgtaacaggattacaggtgagcaataagttagtctacgcaagcagcagtgaaggaacca taaaggtttttgagacaagagagtcggaattagtctgtatttttgagtcagagaatattcaggctgaaagaggtggaatc ttgacggagcgacatatccgaggattttatgcgaatgatgaactgatttattatggggatgatggcattaatatcaaagt attaaactggaagacaggcaaagtacgcaaacttcctaatcactgtgaggactatggggtaacagactgtatcgtacgac ataaccagtacttattttcatcagcttatagcttggacagtggattgggatatgtcaatattcgagaattcattggagaa aagtatctaacatctttgaatgacactgatactgagagagttatatccctttgttgtacaacggcaccagatggcgcttt gatagttgtaacagctggaatgcaactaaaagtttggactgaagtcaacaataagtaa |
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Protein
| Protein ID | pfu_aug2.0_481.1_04240.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_481.1_04240.t1 MNIVDISNIEVTVVTNADEEDDIVNVDIDEDDVDINVAVTTQEEVTINNDPSQGETTEKNLSNSSDPIRFDVSPGEPLHQ ANTQPPTKKEKVQKATKKNTKETKVSEKAVDKDRNLSNPWRTKVFSVFELEGHNDLVTAADIRKTTLVTASRDTTIRTWD IVKRQEIRSYGGHTGTVTCVVLLSEDDSKSIGKFLETEAEGSLIISGSTDCSVKIWSAETGEILRSTYTYNPVTRLVYHP VAQAVLTASDGGKIDVWNVESGENVQSLRAFDDCVTGLQVSNKLVYASSSEGTIKVFETRESELVCIFESENIQAERGGI LTERHIRGFYANDELIYYGDDGINIKVLNWKTGKVRKLPNHCEDYGVTDCIVRHNQYLFSSAYSLDSGLGYVNIREFIGE KYLTSLNDTDTERVISLCCTTAPDGALIVVTAGMQLKVWTEVNNK |
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