Gene
| Gene Model ID | pfu_aug2.0_482.1_07588 |
|---|---|
| Locus | scaffold482.1 : 277295 ... 284360 : + |
| To GenomeBrowser | scaffold482.1:277295..284360 |
| Genes list of scaffold | scaffold482.1 |
| Synonym | pfu_aug1.0_5068.1_52438 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_482.1_07588.t1 | 1 | 1 | Lectin_C | 70 | 180 | 4.9e-18 | 65.7 | 1.1e-21 | 7.9e-18 | 65.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_482.1_07588.t1 | gi|226443143|ref|NP_001140055.1| | CD209 antigen-like protein A [Salmo salar] | 7.0e-21 |
| pfu_aug2.0_482.1_07588.t1 | gi|704283247|ref|XP_010170142.1| | PREDICTED: B-cell differentiation antigen CD72 [Caprimulgus carolinensis] | 1.0e-20 |
| pfu_aug2.0_482.1_07588.t1 | gi|541959898|ref|XP_005435690.1| | PREDICTED: CD209 antigen [Falco cherrug] | 2.0e-20 |
Transcript
| Transcript ID | pfu_aug2.0_482.1_07588.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_482.1_07588.t1 atggaagtaaccggatgttacagttctaccgaattgcagcggcggtcgtcgtccatgcaagcaggagatgcttactcttc ctgggcacctggtctcactcccatattgggagttcgcttctttttatatggtggagaacctcgtgtttgtcccagtggat gggttcaattcaattatgtttgttactatttccataattccggaggctcgtgggattgggcgaagaaccaatgtcatgct ttcggagctaagtttgttcaaataacaacggaggatgaagacacgtttatacggaatcatatcctttctattggatatac aaattccgagaaccgtgatttttggattggcggtacagacatagctgtagaaggggaatggaggtggatagagacaggag agctatacacctataccaagtggggacccagtaatccagacaacaggaatggaaaccaacattgtggaatactgtttcaa ccaacaggatatatgtggcatgacacagagtgtacaaacacaaactcttatatttgtgaattgtga |
|
Protein
| Protein ID | pfu_aug2.0_482.1_07588.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_482.1_07588.t1 MEVTGCYSSTELQRRSSSMQAGDAYSSWAPGLTPILGVRFFLYGGEPRVCPSGWVQFNYVCYYFHNSGGSWDWAKNQCHA FGAKFVQITTEDEDTFIRNHILSIGYTNSENRDFWIGGTDIAVEGEWRWIETGELYTYTKWGPSNPDNRNGNQHCGILFQ PTGYMWHDTECTNTNSYICEL |
|