Gene
| Gene Model ID | pfu_aug2.0_484.1_14213 |
|---|---|
| Locus | scaffold484.1 : 214561 ... 226863 : - |
| To GenomeBrowser | scaffold484.1:214561..226863 |
| Genes list of scaffold | scaffold484.1 |
| Synonym | pfu_aug1.0_28075.1_40703 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| retinol dehydrogenase 13-like | GO:0008152 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_484.1_14213.t1 | 1 | 1 | adh_short | 50 | 188 | 1.1e-21 | 77.4 | 6.8e-25 | 2.0e-21 | 76.6 |
| pfu_aug2.0_484.1_14213.t1 | 1 | 1 | KR | 51 | 145 | 5.8e-09 | 35.8 | 3.2e-12 | 9.4e-09 | 35.1 |
| pfu_aug2.0_484.1_14213.t1 | 1 | 1 | Epimerase | 52 | 228 | 1.2e-07 | 31.4 | 5.6e-11 | 1.7e-07 | 30.9 |
| pfu_aug2.0_484.1_14213.t1 | 1 | 1 | adh_short_C2 | 59 | 190 | 3.6e-07 | 30.2 | 3.5e-10 | 1.0e-06 | 28.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_484.1_14213.t1 | gi|657747652|ref|XP_008309137.1| | PREDICTED: retinol dehydrogenase 13-like [Cynoglossus semilaevis] | 0.0 |
| pfu_aug2.0_484.1_14213.t1 | gi|348500212|ref|XP_003437667.1| | PREDICTED: retinol dehydrogenase 13-like [Oreochromis niloticus] | 0.0 |
| pfu_aug2.0_484.1_14213.t1 | gi|498930172|ref|XP_004539646.1| | PREDICTED: retinol dehydrogenase 13-like [Maylandia zebra] | 0.0 |
| pfu_aug2.0_484.1_14213.t1 | gi|657597051|ref|XP_008303251.1| | PREDICTED: retinol dehydrogenase 13-like [Stegastes partitus] | 0.0 |
| pfu_aug2.0_484.1_14213.t1 | gi|554848590|ref|XP_005934591.1| | PREDICTED: retinol dehydrogenase 13-like [Haplochromis burtoni] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_484.1_14213.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_484.1_14213.t1 atgcagagtgacaatgcaggcattattggttttgtcaagagacacaagtacttagttggatctgcaatttttctaggtgt agggacagccttactaaagtatcactttgctggaggtgtatgtaggagtaaggccaggctagatggaaagactgttataa tcactggagctaatactggcatcggcaaagagactgctaaggatctggctagaagaggagccagggtgattttggcatgt cgagatctaaccagggccaatgttgctgctgatgagataaagaaggatacaaagaatgacaagattgtggttagaaagct cgacttggcttctctacagtctgtacgagacttctccgctgatatcttaaagtctgagccaaaaatagacatcctcatta acaatgctggtataatgaggtgtccatattggaaaacagaggatggatttgagatgcagtttggggtcaaccaccttggt cacttcctgctgaccaacctattacttgataggataaaggaatcggctcctgctaggattgttactgtctcttcgttggc tcatacaagaattgatggaataaactttgatgacataaacagcgagaaagaatatgatccgaaaaaagcttattcacaaa gtaaactagcgaatgttctcttcacaagagagctgagtaaaagattaaatggtacaggagttactgccaattccttacat cctggtgtcattaagacagaattaggtcgtcatatgaacataagctggttatatcggcagctattgattcctgtgttcct tatcttcattaaaacaccggagcagggagcacaaactactatatgttgtgctgtgtcggaggaactcaatgatgtatcag gaaaatatttcagtgactgtgtaataaaggaggagactgaagcggcacaagatgatgcagcagctgaaaggttgtggaaa ttgtcggaggaaatggtgggaatgaagaacaaacaatga |
|
Protein
| Protein ID | pfu_aug2.0_484.1_14213.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_484.1_14213.t1 MQSDNAGIIGFVKRHKYLVGSAIFLGVGTALLKYHFAGGVCRSKARLDGKTVIITGANTGIGKETAKDLARRGARVILAC RDLTRANVAADEIKKDTKNDKIVVRKLDLASLQSVRDFSADILKSEPKIDILINNAGIMRCPYWKTEDGFEMQFGVNHLG HFLLTNLLLDRIKESAPARIVTVSSLAHTRIDGINFDDINSEKEYDPKKAYSQSKLANVLFTRELSKRLNGTGVTANSLH PGVIKTELGRHMNISWLYRQLLIPVFLIFIKTPEQGAQTTICCAVSEELNDVSGKYFSDCVIKEETEAAQDDAAAERLWK LSEEMVGMKNKQ |
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