Gene
| Gene Model ID | pfu_aug2.0_485.1_17473 |
|---|---|
| Locus | scaffold485.1 : 1 ... 47735 : - |
| To GenomeBrowser | scaffold485.1:1..47735 |
| Genes list of scaffold | scaffold485.1 |
| Synonym | pfu_aug1.0_3387.1_59221 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_485.1_17473.t1 | 3 | 1 | VWA_2 | 67 | 214 | 2.7e-14 | 53.6 | 1.1e-16 | 1.9e-13 | 50.9 |
| pfu_aug2.0_485.1_17473.t1 | 2 | 1 | VWA | 67 | 222 | 9.4e-12 | 45.0 | 1.9e-14 | 3.2e-11 | 43.2 |
| pfu_aug2.0_485.1_17473.t1 | 3 | 1 | VWA_3 | 67 | 216 | 3.0e-06 | 26.9 | 1.5e-08 | 2.5e-05 | 24.0 |
| pfu_aug2.0_485.1_17473.t1 | 1 | 1 | DUF2201 | 68 | 181 | 3.3e-07 | 30.3 | 5.3e-10 | 8.7e-07 | 29.0 |
| pfu_aug2.0_485.1_17473.t1 | 3 | 2 | VWA_3 | 236 | 257 | 3.0e-06 | 26.9 | 4.6 | 7600.0 | -3.6 |
| pfu_aug2.0_485.1_17473.t1 | 3 | 2 | VWA_2 | 334 | 357 | 2.7e-14 | 53.6 | 0.79 | 1300.0 | -0.7 |
| pfu_aug2.0_485.1_17473.t1 | 3 | 3 | VWA_3 | 387 | 414 | 3.0e-06 | 26.9 | 0.47 | 780.0 | -0.4 |
| pfu_aug2.0_485.1_17473.t1 | 3 | 3 | VWA_2 | 422 | 456 | 2.7e-14 | 53.6 | 3.3 | 5500.0 | -2.8 |
| pfu_aug2.0_485.1_17473.t1 | 2 | 2 | VWA | 487 | 513 | 9.4e-12 | 45.0 | 2.2 | 3600.0 | -2.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_485.1_17473.t1 | gi|260823627|ref|XP_002606182.1| | hypothetical protein BRAFLDRAFT_126499 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_485.1_17473.t1 | gi|470244792|ref|XP_004356128.1| | hypothetical protein DFA_08640 [Dictyostelium fasciculatum] | 3.0e-27 |
| pfu_aug2.0_485.1_17473.t1 | gi|470515414|ref|XP_004352919.1| | von Willebrand factor type A domain containing protein [Acanthamoeba castellanii str. Neff] | 1.0e-25 |
Transcript
| Transcript ID | pfu_aug2.0_485.1_17473.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_485.1_17473.t1 atgatcacagagctaccatcactggatgcacatctgtccatgcaagcaattcccagtgaccgagaaaacgaaaacgatgc atgcacttcaggtgacagcccaacattaagccaagaacagtttatcaaggtttcaattccaatagatccaattctgagct tactagatgattcagagaaacaaaatgagaaaacccatctgattatagctatagacaacagtggatctatgagtggaagc ccattaagacaggcactatcagcattaaaagagattcttgggaacactgtacatctaaggaatattcagacagatgttgt agtgtacaattctactgctcgtgttgtgatgtttgacgaacataattatgtggagcagatcaacgctatcaaagcaacag gagggacttgcttcagggaagccttcaacaagatggctgaattagtcagaaatgaagaagcggactacagcaggagaatt attacatttttaacagacggacatgatggtcatagtgcaaacgtaactcccgaggagaaggtcaaatccttggtcgatac cggaaaacctttctctgtacactgtgtggggttctccaaagatcataattacaaattattgagggacctttgtaagtttg gtcttggagatggcatgttccgatattgtgaaaatcaggatggaccagacgccttaaaagataaactacaagagctgttt gacttcattctattaaatttagcatccaatgttgatgtaaacattgctgctgaggatggctgtaaacttctctataatgg aaagtttgtatcagagtgtgtattatcaggagatatagaggaatctgaaaccttggaggattctcactcagagcccaaac agttagtattaacagaatcctggctgtacatggctgatcctagtgttattccagagttctctatcaacatctcatttaat ataagcaccaagagtggtaaggagacagtgaggattccgtgtaaggtgacaaaggttgatagagaagtactgtcctcagc tgctgataagatacagtggaatctcaggactctcacaaggaatgctgacatcttagcttcaaaactaggagaggcaatct ctgaaaataaggatgtgtctaagtttggttctaggatagagaagatgcaggagaagttagcccacattccaattttcaac attgagtttgataaacatttacgtgaggcttttagggcactgatggctgacatacagacaaagatcaacaaaatgcggac aatgctagctgagtttgtgagaggtgatacacaatctatacagatgttagctagggcacacgacatgaggtaccaagcta agttcagcaagtccagaagacagaggattatggataaaagagctctaaaaaacattggtaatgcaaaactagcacagtcc cagctagacacattgatgatagataaacaggaagtggaaagaattacccaggatgctgctgactattatttttgtgctct atcccagaattctgtgaaggacatccttttgggcaaagataaagaggatataatgggatttggtgtggctgtacagagac ctgagcatgtactggatgaaccttcaatg |
|
Protein
| Protein ID | pfu_aug2.0_485.1_17473.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_485.1_17473.t1 MITELPSLDAHLSMQAIPSDRENENDACTSGDSPTLSQEQFIKVSIPIDPILSLLDDSEKQNEKTHLIIAIDNSGSMSGS PLRQALSALKEILGNTVHLRNIQTDVVVYNSTARVVMFDEHNYVEQINAIKATGGTCFREAFNKMAELVRNEEADYSRRI ITFLTDGHDGHSANVTPEEKVKSLVDTGKPFSVHCVGFSKDHNYKLLRDLCKFGLGDGMFRYCENQDGPDALKDKLQELF DFILLNLASNVDVNIAAEDGCKLLYNGKFVSECVLSGDIEESETLEDSHSEPKQLVLTESWLYMADPSVIPEFSINISFN ISTKSGKETVRIPCKVTKVDREVLSSAADKIQWNLRTLTRNADILASKLGEAISENKDVSKFGSRIEKMQEKLAHIPIFN IEFDKHLREAFRALMADIQTKINKMRTMLAEFVRGDTQSIQMLARAHDMRYQAKFSKSRRQRIMDKRALKNIGNAKLAQS QLDTLMIDKQEVERITQDAADYYFCALSQNSVKDILLGKDKEDIMGFGVAVQRPEHVLDEPSM |
|