Gene
| Gene Model ID | pfu_aug2.0_485.1_17479 |
|---|---|
| Locus | scaffold485.1 : 191043 ... 219924 : + |
| To GenomeBrowser | scaffold485.1:191043..219924 |
| Genes list of scaffold | scaffold485.1 |
| Synonym | pfu_aug1.0_1014.1_65742 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| tho complex subunit 1-like | GO:0005515 GO:0006355 GO:0042981 GO:0043234 GO:0044428 GO:0048297 GO:0051028 GO:0051716 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_485.1_17479.t1 | 3 | 1 | efThoc1 | 76 | 253 | 0.0 | 402.6 | 0.0 | 0.0 | 189.8 |
| pfu_aug2.0_485.1_17479.t1 | 3 | 2 | efThoc1 | 313 | 355 | 0.0 | 402.6 | 7.8e-09 | 2.9e-05 | 22.7 |
| pfu_aug2.0_485.1_17479.t1 | 3 | 3 | efThoc1 | 385 | 623 | 0.0 | 402.6 | 0.0 | 0.0 | 199.8 |
| pfu_aug2.0_485.1_17479.t1 | 1 | 1 | Death | 664 | 740 | 1.4e-13 | 50.3 | 1.1e-16 | 4.2e-13 | 48.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_485.1_17479.t1 | gi|524883335|ref|XP_005098300.1| | PREDICTED: THO complex subunit 1-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_485.1_17479.t1 | gi|260829829|ref|XP_002609864.1| | hypothetical protein BRAFLDRAFT_126015 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_485.1_17479.t1 | gi|390351008|ref|XP_793772.3| | 0.0 | |
| pfu_aug2.0_485.1_17479.t1 | gi|755560722|ref|XP_011245192.1| | PREDICTED: THO complex subunit 1 isoform X1 [Mus musculus] | 0.0 |
| pfu_aug2.0_485.1_17479.t1 | gi|512982483|ref|XP_004853232.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_485.1_17479.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_485.1_17479.t1 atgaaaactcgggctcaggtttatactgacgtaccgctaaattacaaatgtttctcccgagacaaagcagaggactgtgt acagatcttccacacgtgcagtggtctggagtcagaaaagaaaccagccatggaccaggccatgcgcgatattctgaaga aacacattgcagatgaggcaggtgttgaagtttacagaaactacacattactatccattcaactagcagcaaatgaatgc tgttctacggccatgccctttgtactcctgtcagatacatttgacctcataactctggaagaatgtgaagaagtgttcaa tctggtagaagaaaacctgtccgtttggaaatcggagactttttatgatgcaggcaaaaactacctcctcagaatgtgca atgatttactacgcagactttccaagtcacagaatacagttttctgtgggaggatccagcttttcctgtctcgactcttt cctttatctgaaaaatcagcgttgaacttaatgggccagtttaatttggataacataacaacattttcatcaaagtcaga agagttcaaatttaaagcacaagagattcacatgaaggatgatgtaatggaggtagaggaaggagagatggaagatttct caagtagttccacaccaatagattacaacttgtacaggagattttggacgttacaggattatttccgtaaaccaacacag tgctatgataaagtgccatttaaagcatttgctcagaaatgtttctccagagacaaagccgaggactgtgtacagatctt ccacacatgcagtggtgtggagtcagaaaagaaaccagccatggaccaggccatgcgagatattttgaagaaacacattg cagatgaggcaggtgttgaagtttacagaaactacacattactatctattcaactggcagcaaatgaatgttgttctacg gccatgccctttgtactcctgtcagatacatttgacctcataactctggaagaatgtgaagaagtgttcaatctggtaga agaaaacctgtccgtttggaaatcgatttactacgcagactttccaagtcacagaatacagttttctgtgggaggattca gctcttcctgtctcgactctttcctttgtctgaaaaatcagctcctggaccttcaattaaatgacagtaattttaggaga tacgtcctggttcagttcctgattttgttccaatacctcaatgctcaagtcaaattcaaaaatgcagcacaagctctgac agaggaaaatgctcagtggattaaagtcacacaggacaaagtgtatcagctgattagggagacgccccctaatggtgacc agtttgctaaaactgtagagcatatccttacaagagaggaatactggaataaatggaagaatgaaggatgttcaagtttt gagagatcccctgctacagaccaaactaaaccaaagacaaaagcaaagaggaagtgggtgggagacgacttacaggccca cggcaggaagacaataaagatgggaagtgccgagctcacaagattatggaacctagcacctaataatatggacgcttgta aatctgacaaaaggatctttctacctacactagaggatcattttgctgacgccatggaacaagcagatcctgatgcacat atcgagcatgagtacaagttggtccataatcagattttccagtggaaatctctccgtctgctggccagaaggagtccaca tttcttcaatcagacgaccacccctgccatgcccctccctcagtacctagatctcatgctacagaaaatagccaaagaaa tccctcaaactgtcaacaatgaggagatgaggacagatgttggtgaggaggagacgataaaggaagggcacgatgaggag gatctcaaacaggcagatgagcaagatgtagcaggtgatgaggaggcagcagatgatcctttgacaaaagaacaactaca actaatgtcagagaaactcggagaagactggaagaggctggccatagaactgaacttccctgaggatgacctcgcttact ttgaaactgagaatgaactggacagtcagagagcattcaaaatgctgaccatctggcaggaaaaggaagaggacagggca acatgtggttcactaaagattgccttaaaagaagtaggcctacctgaggtgatcgaagctgtgtttggagaatga |
|
Protein
| Protein ID | pfu_aug2.0_485.1_17479.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_485.1_17479.t1 MKTRAQVYTDVPLNYKCFSRDKAEDCVQIFHTCSGLESEKKPAMDQAMRDILKKHIADEAGVEVYRNYTLLSIQLAANEC CSTAMPFVLLSDTFDLITLEECEEVFNLVEENLSVWKSETFYDAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLSRLF PLSEKSALNLMGQFNLDNITTFSSKSEEFKFKAQEIHMKDDVMEVEEGEMEDFSSSSTPIDYNLYRRFWTLQDYFRKPTQ CYDKVPFKAFAQKCFSRDKAEDCVQIFHTCSGVESEKKPAMDQAMRDILKKHIADEAGVEVYRNYTLLSIQLAANECCST AMPFVLLSDTFDLITLEECEEVFNLVEENLSVWKSIYYADFPSHRIQFSVGGFSSSCLDSFLCLKNQLLDLQLNDSNFRR YVLVQFLILFQYLNAQVKFKNAAQALTEENAQWIKVTQDKVYQLIRETPPNGDQFAKTVEHILTREEYWNKWKNEGCSSF ERSPATDQTKPKTKAKRKWVGDDLQAHGRKTIKMGSAELTRLWNLAPNNMDACKSDKRIFLPTLEDHFADAMEQADPDAH IEHEYKLVHNQIFQWKSLRLLARRSPHFFNQTTTPAMPLPQYLDLMLQKIAKEIPQTVNNEEMRTDVGEEETIKEGHDEE DLKQADEQDVAGDEEAADDPLTKEQLQLMSEKLGEDWKRLAIELNFPEDDLAYFETENELDSQRAFKMLTIWQEKEEDRA TCGSLKIALKEVGLPEVIEAVFGE |
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