Gene
| Gene Model ID | pfu_aug2.0_485.1_17480 |
|---|---|
| Locus | scaffold485.1 : 221963 ... 235042 : + |
| To GenomeBrowser | scaffold485.1:221963..235042 |
| Genes list of scaffold | scaffold485.1 |
| Synonym | pfu_aug1.0_56465.1_27398 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_485.1_17480.t1 | 2 | 1 | RWD | 31 | 207 | 3.1e-18 | 65.7 | 9.4e-21 | 2.8e-17 | 62.6 |
| pfu_aug2.0_485.1_17480.t1 | 4 | 1 | IBR | 281 | 294 | 6.0e-08 | 32.4 | 0.33 | 990.0 | -0.3 |
| pfu_aug2.0_485.1_17480.t1 | 4 | 2 | IBR | 307 | 318 | 6.0e-08 | 32.4 | 0.11 | 320.0 | 1.2 |
| pfu_aug2.0_485.1_17480.t1 | 2 | 2 | RWD | 353 | 382 | 3.1e-18 | 65.7 | 0.35 | 1000.0 | -0.5 |
| pfu_aug2.0_485.1_17480.t1 | 4 | 3 | IBR | 376 | 428 | 6.0e-08 | 32.4 | 1.5e-09 | 4.5e-06 | 26.4 |
| pfu_aug2.0_485.1_17480.t1 | 4 | 4 | IBR | 483 | 522 | 6.0e-08 | 32.4 | 1.3e-07 | 0.00039 | 20.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_485.1_17480.t1 | gi|524911252|ref|XP_005110492.1| | PREDICTED: E3 ubiquitin-protein ligase RNF14-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_485.1_17480.t1 | gi|585672066|ref|XP_006818162.1| | PREDICTED: E3 ubiquitin-protein ligase RNF14-like, partial [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_485.1_17480.t1 | gi|514803545|ref|XP_004976659.1| | PREDICTED: E3 ubiquitin-protein ligase RNF14-like [Setaria italica] | 0.0 |
| pfu_aug2.0_485.1_17480.t1 | gi|567875853|ref|XP_006430516.1| | hypothetical protein CICLE_v10011251mg [Citrus clementina] | 0.0 |
| pfu_aug2.0_485.1_17480.t1 | gi|694391344|ref|XP_009371196.1| | PREDICTED: E3 ubiquitin-protein ligase RNF14 isoform X2 [Pyrus x bretschneideri] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_485.1_17480.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_485.1_17480.t1 atggctacaggaggagaaccagagtcgtatgcattcccagaaaagaagaacttgtcaaaatggtcgccagaactcacaga taatttgatagaacagaatgatgagatattggccttggaatctatatttgaaggtgatggagaggatgaatttcttattc ttcaaagacctcctgaagatattgattttaaaagtgaagatattgatttcaaaagtgaatatgctacagcacaatgcaat gacattcaggaactatttactgttatgctgaaaatacctgttgctacaagtgatgaggaaatccaggttgacatttgtat gccagtgataactgatacaaagttagataccaaggatacacaaagactgaaatataatagatcagactcaggtcgaagac ttctgggtagttttggagtatcacacctgacccctttacgtctcgtagcagtattacccccagagtacccctcccatgga cccccaaccttcacacttacatcagaatggctgagccacacccagttgggagcactgtgtaaagccctggatgaggtttg gagggaatctcttggcttacctatactctttacatggatagactggctgaaaaataatgctctaagccatttaggtctga gtaatcatatattacttgatgagagtgaccctgatgatattattgacacaagagcatactcagattgtctggatgttatg ttgacagcagatcaacttctcaggtacaaccaacaacaagtagacctgatatttcaaagagatacacacgagtgtcctgt gtgctttatagagaggcttggaagggaatgtgttaagtttaatgagtgtggacatttcttctgtttggactgtgccacag atctctgtaaacaccacgtccaggagggatcagtgacagatttaagatgtccagaacaaaaatgtgagacagaaattcct ccttatgtaatacagaatctactcggagatgaggaattttcacgttttgaagagcttgctctcagtggaacatgttttga tgaggaggaaaggctgattgctgaagaaaaggaaaaagagagaaaggagaatgaagagaatacattgaagaagaaaattg aaaaagctaaacggaagcaagaagagtttcagagtcgatcctttgtcaagcagttttgtaagcaatgcccttcttgtgat atggacatcatgaaggacggaggatgtaacaaggtccactgccagtattgcaataggagcatgtgttggagctgtgggaa agatataactgctgaaagctacagccattttgaagccagcacacgatgccaaggatttgatccttatcttggggataaca atttaattagagtggcaccacctccacttgtacgcagacctccagtgcaattacaagcaatcgatcaggagcttgcacaa aacccagaacagagaaagaatttggtcaattgtccaaaatgtaagaggagaaaccttaaacaaaataagaataaccatat gaagtgttgggcgtgtggcataaacatgtgctttatgtgccgtgaagtcattaaagacgtccctataacgaggcattttt ctgcagacaagccatgcagacagcatacatga |
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Protein
| Protein ID | pfu_aug2.0_485.1_17480.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_485.1_17480.t1 MATGGEPESYAFPEKKNLSKWSPELTDNLIEQNDEILALESIFEGDGEDEFLILQRPPEDIDFKSEDIDFKSEYATAQCN DIQELFTVMLKIPVATSDEEIQVDICMPVITDTKLDTKDTQRLKYNRSDSGRRLLGSFGVSHLTPLRLVAVLPPEYPSHG PPTFTLTSEWLSHTQLGALCKALDEVWRESLGLPILFTWIDWLKNNALSHLGLSNHILLDESDPDDIIDTRAYSDCLDVM LTADQLLRYNQQQVDLIFQRDTHECPVCFIERLGRECVKFNECGHFFCLDCATDLCKHHVQEGSVTDLRCPEQKCETEIP PYVIQNLLGDEEFSRFEELALSGTCFDEEERLIAEEKEKERKENEENTLKKKIEKAKRKQEEFQSRSFVKQFCKQCPSCD MDIMKDGGCNKVHCQYCNRSMCWSCGKDITAESYSHFEASTRCQGFDPYLGDNNLIRVAPPPLVRRPPVQLQAIDQELAQ NPEQRKNLVNCPKCKRRNLKQNKNNHMKCWACGINMCFMCREVIKDVPITRHFSADKPCRQHT |
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