Gene
| Gene Model ID | pfu_aug2.0_485.1_17482 |
|---|---|
| Locus | scaffold485.1 : 245113 ... 260414 : - |
| To GenomeBrowser | scaffold485.1:245113..260414 |
| Genes list of scaffold | scaffold485.1 |
| Synonym | pfu_aug1.0_4324.1_52221 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_485.1_17482.t1 | 4 | 1 | CKAP2_C | 36 | 76 | 1.3e-17 | 63.7 | 0.064 | 240.0 | 0.3 |
| pfu_aug2.0_485.1_17482.t1 | 4 | 2 | CKAP2_C | 118 | 187 | 1.3e-17 | 63.7 | 0.3 | 1100.0 | -1.9 |
| pfu_aug2.0_485.1_17482.t1 | 4 | 3 | CKAP2_C | 276 | 468 | 1.3e-17 | 63.7 | 6.2e-16 | 2.3e-12 | 46.4 |
| pfu_aug2.0_485.1_17482.t1 | 4 | 4 | CKAP2_C | 476 | 508 | 1.3e-17 | 63.7 | 3.1e-08 | 0.00012 | 21.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_485.1_17482.t1 | gi|524872054|ref|XP_005092794.1| | PREDICTED: uncharacterized protein LOC101857316 [Aplysia californica] | 1.0e-26 |
| pfu_aug2.0_485.1_17482.t1 | gi|585675561|ref|XP_002736600.2| | PREDICTED: cytoskeleton-associated protein 2-like [Saccoglossus kowalevskii] | 8.0e-16 |
| pfu_aug2.0_485.1_17482.t1 | gi|390356931|ref|XP_003728891.1| | 3.0e-14 | |
| pfu_aug2.0_485.1_17482.t1 | gi|632977989|ref|XP_007905653.1| | PREDICTED: cytoskeleton-associated protein 2-like [Callorhinchus milii] | 3.0e-07 |
Transcript
| Transcript ID | pfu_aug2.0_485.1_17482.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_485.1_17482.t1 atgaatacagtagatagagcgtccaatactgacctagaaattatagttacgctcgaatgttttctgatcgacaacacagt gaggctggagagatggagagagaaaaagaaacatgaagatgaaaagaagaacaaattaaaatccagtgtcagaaaacctc taaccaagacacaaaacagcaagaccacacagagcaagccccttccaatcagtatggacaaaccaagttatacaaagtca gggccacctaaacacagcaagaccacacagagtaggcccctacctgtcagtatggacaaaccaacttatgcaaagtcagg gcaatccaaacaggcatcaagtttgttatctcaaggacagacaaacacagcacacagacagaccgtcaaaacggctactg tagcaccacgtagatccttcaagatagtcagctctagaataggtactgctagtcaggccaagtcaagaggaagtctacga tttgatgagaagaaatcacagcatggatccaatagaaacgttccttcacgatctgtcccaatgcataacaataaatctgg cagtaacggaccgtcaaatttggcaggtgttgagaaatttttatctcggcaaaaatgtgcagctgtaaaaccaaatctga aaagacgtcattctgatgtgataacaggagaggtaaagacgagaactcctggtatcttgaagaggaagtcgtgtctgccc atgatacctgacagtacgtcatccagtgaaggggaggggaacaggacgactgtaagtgacgggatcaagactccgggacg gaatgtcagatttaggtcacctgacctgacacaagacaaaccacacgcacacttcagaaaaactccaaataagaaaaccc aggaatctatgagaggcagacttgatgattggttgaaggcaaagggcaggacaccttccaagttccgacacctgatgtgc tttgatgcccacctgtcggcaaagaaacggatggatccaaaaaggaagagaagccttacagtggaggaactgtctcaaca gcaagagaccatggagaaggagagtagagcggtcaccaatctacgggacaaatttgatctagcacaatctgacgatctca gccgtatcagatctactgggagcatatcagatgacctctccttggaggatcagctagattcaatgttagaggaatgtacc acattgtttgatgcgggttgtcctctacaagacactctcaaatggcttgaccaaatagaggagaacatggacatggcagc cagctcagccaagttctatatctgtaaggctagagtgctacagtcatcaggggatactgacagtgtgttacaggtgtttg agttggccgtcagaaataacgctcagattatagaatgtgtacgtggcacatacatttgtagctcagccaagttctatatc tgtaaggccagagtgctacagtcgtcaggggatactgacagtgtgttacaggtgtttgagtcagctgtcagaaataatgc tcaggaatacaacacatatccgggaccaaacaactacggatttagaactatggacccaaatacagaccaaataaccccag acccatctatggagcaaatagaggacgcccacctatggcgagacagaatgtga |
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Protein
| Protein ID | pfu_aug2.0_485.1_17482.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_485.1_17482.t1 MNTVDRASNTDLEIIVTLECFLIDNTVRLERWREKKKHEDEKKNKLKSSVRKPLTKTQNSKTTQSKPLPISMDKPSYTKS GPPKHSKTTQSRPLPVSMDKPTYAKSGQSKQASSLLSQGQTNTAHRQTVKTATVAPRRSFKIVSSRIGTASQAKSRGSLR FDEKKSQHGSNRNVPSRSVPMHNNKSGSNGPSNLAGVEKFLSRQKCAAVKPNLKRRHSDVITGEVKTRTPGILKRKSCLP MIPDSTSSSEGEGNRTTVSDGIKTPGRNVRFRSPDLTQDKPHAHFRKTPNKKTQESMRGRLDDWLKAKGRTPSKFRHLMC FDAHLSAKKRMDPKRKRSLTVEELSQQQETMEKESRAVTNLRDKFDLAQSDDLSRIRSTGSISDDLSLEDQLDSMLEECT TLFDAGCPLQDTLKWLDQIEENMDMAASSAKFYICKARVLQSSGDTDSVLQVFELAVRNNAQIIECVRGTYICSSAKFYI CKARVLQSSGDTDSVLQVFESAVRNNAQEYNTYPGPNNYGFRTMDPNTDQITPDPSMEQIEDAHLWRDRM |
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