Gene
| Gene Model ID | pfu_aug2.0_486.1_20826 |
|---|---|
| Locus | scaffold486.1 : 98376 ... 106704 : + |
| To GenomeBrowser | scaffold486.1:98376..106704 |
| Genes list of scaffold | scaffold486.1 |
| Synonym | pfu_aug1.0_6.1_57888 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_486.1_20826.t1 | 1 | 1 | RNA_GG_bind | 283 | 366 | 5.4e-26 | 90.1 | 8.6e-30 | 1.3e-25 | 88.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_486.1_20826.t1 | gi|676482425|ref|XP_009062696.1| | hypothetical protein LOTGIDRAFT_235308 [Lottia gigantea] | 4.00001e-41 |
| pfu_aug2.0_486.1_20826.t1 | gi|524864604|ref|XP_005089137.1| | PREDICTED: phosphorylated adapter RNA export protein-like [Aplysia californica] | 6.0e-35 |
| pfu_aug2.0_486.1_20826.t1 | gi|602637703|ref|XP_007425693.1| | PREDICTED: phosphorylated adapter RNA export protein [Python bivittatus] | 3.0e-32 |
| pfu_aug2.0_486.1_20826.t1 | gi|736211885|ref|XP_010777465.1| | PREDICTED: phosphorylated adapter RNA export protein [Notothenia coriiceps] | 2.0e-30 |
| pfu_aug2.0_486.1_20826.t1 | gi|551499427|ref|XP_005801264.1| | PREDICTED: phosphorylated adapter RNA export protein-like [Xiphophorus maculatus] | 7.0e-29 |
Transcript
| Transcript ID | pfu_aug2.0_486.1_20826.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_486.1_20826.t1 atggagcaagaacacgaggaaggagaaataacagactctgaatctgagtcagagcaggcaccatccaacaagggaaagga tgccatgtcgttgatgtcaggtttagagacagccgcccgatcctcaatgtcagaggtggaatcctctgtgagccaagctg ttacaatggctatcccaagagtctctgctgcacctccagctacctctacacagccatcgtcatatgacagcagaaatagt acagtattcaggaatgtaccaaggcaccattcatctagtgacgaatccagtgattccctcagtgatgaagatacagattt atggaggtgtaaaaaggctaaatatttttcttcctccaaaagggaagattctatggttactgaactgccagatgaaatca aatctccaccgcgtaataacggattttcaaaattcgtacagccgagtggttcagtgaaacgtaagatcaacaatgtctgg ggatctgtcttaactgagcaatgcttgactgaaaatatgaaaagtgtggaagtgtataaaaatccagaactagtgaatag tgacagaaaagtagagaaatatgacttcactaatgcatacgatgatgacaggccggatgccatcgatatcttccccaaaa caactaacgatccctttgaaaatgtaatagcatctgaccatgagggagattacttatctcatagacaaggtacaaagaga aagaggaaggcgaaagatagaattggaagaagacatgttaaggacagattgaacgattacccaccagttaaaactctcag tgaaatcagtgacgagcctgtaactgtagaagacagtgaacaagacattgttagttacatagctaaagaattgtttgaac gtaaagtggaattaattgcaaaaattgtccgagttgtcggtaaggaaaaagccttagaggttttcgaagaagtgttgaag atagaggaaaatggaggcatgcttaccaatgatggttttagaaggagggccccaggaggagtttacttcactctaatgaa aacagataaaggccttactgcagagcagcatgatgagatatttgccgaggaggaaagaaattataaggaatggtgcaaaa aggcaaagaaagaaagaagaaacaaagcacggaagatgaaaagaatgtacaagaaattacctcagtcaaagttattagag acaggacataaaaatgacgaatgcagtactagcaacaggaaaggtgaagatgatatgaactctgataattctagcggaga agacgacggcaatatggatttaatggacagtgtgaatgacagacaaacaaacaaaggtgctatgattacggacataggca aggaggaatccggggctgatatcatagatttaggactcgatgagggggagataatagattaa |
|
Protein
| Protein ID | pfu_aug2.0_486.1_20826.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_486.1_20826.t1 MEQEHEEGEITDSESESEQAPSNKGKDAMSLMSGLETAARSSMSEVESSVSQAVTMAIPRVSAAPPATSTQPSSYDSRNS TVFRNVPRHHSSSDESSDSLSDEDTDLWRCKKAKYFSSSKREDSMVTELPDEIKSPPRNNGFSKFVQPSGSVKRKINNVW GSVLTEQCLTENMKSVEVYKNPELVNSDRKVEKYDFTNAYDDDRPDAIDIFPKTTNDPFENVIASDHEGDYLSHRQGTKR KRKAKDRIGRRHVKDRLNDYPPVKTLSEISDEPVTVEDSEQDIVSYIAKELFERKVELIAKIVRVVGKEKALEVFEEVLK IEENGGMLTNDGFRRRAPGGVYFTLMKTDKGLTAEQHDEIFAEEERNYKEWCKKAKKERRNKARKMKRMYKKLPQSKLLE TGHKNDECSTSNRKGEDDMNSDNSSGEDDGNMDLMDSVNDRQTNKGAMITDIGKEESGADIIDLGLDEGEIID |
|