Gene
| Gene Model ID | pfu_aug2.0_486.1_20829 |
|---|---|
| Locus | scaffold486.1 : 128797 ... 132335 : - |
| To GenomeBrowser | scaffold486.1:128797..132335 |
| Genes list of scaffold | scaffold486.1 |
| Synonym | pfu_aug1.0_6.1_57884 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_486.1_20829.t1 | 1 | 1 | Ala_racemase_N | 46 | 249 | 3.1e-08 | 33.4 | 3.6e-11 | 1.1e-07 | 31.6 |
| pfu_aug2.0_486.1_20829.t1 | 2 | 1 | Orn_Arg_deC_N | 61 | 283 | 0.0 | 162.6 | 0.0 | 1.4013e-45 | 155.4 |
| pfu_aug2.0_486.1_20829.t1 | 2 | 1 | Orn_DAP_Arg_deC | 194 | 219 | 3.9e-17 | 62.0 | 0.49 | 1400.0 | -1.1 |
| pfu_aug2.0_486.1_20829.t1 | 2 | 2 | Orn_Arg_deC_N | 336 | 363 | 0.0 | 162.6 | 0.0036 | 11.0 | 5.1 |
| pfu_aug2.0_486.1_20829.t1 | 2 | 2 | Orn_DAP_Arg_deC | 370 | 475 | 3.9e-17 | 62.0 | 5.8e-20 | 1.7e-16 | 59.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_486.1_20829.t1 | gi|676478862|ref|XP_009061564.1| | hypothetical protein LOTGIDRAFT_234918 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_486.1_20829.t1 | gi|260797946|ref|XP_002593961.1| | hypothetical protein BRAFLDRAFT_118823 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_486.1_20829.t1 | gi|585673343|ref|XP_006818396.1| | PREDICTED: probable diaminopimelate decarboxylase, chloroplastic-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_486.1_20829.t1 | gi|194689552|gb|ACF78860.1| | unknown [Zea mays] | 0.0 |
| pfu_aug2.0_486.1_20829.t1 | gi|414882139|tpg|DAA59270.1| | TPA: hypothetical protein ZEAMMB73_338404 [Zea mays] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_486.1_20829.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_486.1_20829.t1 atggcgacctacagattaaacaacggatttcatttcgaagatggaaatttattctgcgaggacattaaagtttctagtga atcgatatttatagatctgcatgtcaaaagcccatttttcgtgtttagtgaggcacagattctacacaatgtcaaacagt acaaagacgttttagatcagctgaacttaaagtacatacttaactattcaatgaaggcgaatgcaaatccacacatcatg cgtattttcaaggagagtggactttctttgacgttagtaagtggaatggagcttcggtttgccttggaatgtggcttcaa cccaaagacactagtctttaacggaaatggaaagcttgatgaagaaatcgctttggcattaaagcacgatgtgttactta acatcgattctcttttcaacatgaagcaaacgttaaggatatgcagaaaaactggtcataaagccagacttttgttaagg atcaatccaggaataaacccggatgtccatagatatgtcagcactggtcaggaggggtccaaatttggactgttctcaga ggagttacaagaagtcatagaggcagcttctgattccaaagaggtagaagtagtgggtttgcactgtcaccttgggtcaa ctattaagaaaacggaaataatcagaaatagcgtaagagttctgaagcatatatggaaagaaatgaaggaaaaggggttt tgcagtctacaatatcttaacataggcggcgggctaggaattgactatcataaattggtagacaggaccaaaccgttccg ttgtctagatgattcacttcgagctgaaataaaagatgtagaaagtcacgtatcgtcagatcatcggttaaagacaattt tgcacgaattcattaatgagaggtgcacaacagcagactttgaatgtcatttgcaacataacaaagaggaaaagttagca gaaattaaagatgccctatcgcatggaaaggtccaagtaccgtctgcccgtgatctggtggagtccgtggtagacttact ggaggaggacatgacactagtcctagaacctgggcggtccctgatagctgatgcttgtatattatattctacagtgttag gatgtaagaaaagtggagacaagagatatatggtcattgacgggtctatgacggaggtgatccgcccttgcctgtacgat gcataccatcacatagatttagcctgtcctagtcagcacgaagatacccaaaagtttgtgtttgacgtggtgggaccagt gtgtgaaagtgcagatttccttgggaagaatcgtttgatgtcaacccctcatcctggttgtggagtagcaatatttgatg taggtgcttattgtgggagtatggcctccaactacaacctcagaattcgcccagcagaaatacttatcagtggtagttcc tcgcgtcttatcaggaaacctgacacatatgaagacttaatgagaccatatgacccaatctga |
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Protein
| Protein ID | pfu_aug2.0_486.1_20829.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_486.1_20829.t1 MATYRLNNGFHFEDGNLFCEDIKVSSESIFIDLHVKSPFFVFSEAQILHNVKQYKDVLDQLNLKYILNYSMKANANPHIM RIFKESGLSLTLVSGMELRFALECGFNPKTLVFNGNGKLDEEIALALKHDVLLNIDSLFNMKQTLRICRKTGHKARLLLR INPGINPDVHRYVSTGQEGSKFGLFSEELQEVIEAASDSKEVEVVGLHCHLGSTIKKTEIIRNSVRVLKHIWKEMKEKGF CSLQYLNIGGGLGIDYHKLVDRTKPFRCLDDSLRAEIKDVESHVSSDHRLKTILHEFINERCTTADFECHLQHNKEEKLA EIKDALSHGKVQVPSARDLVESVVDLLEEDMTLVLEPGRSLIADACILYSTVLGCKKSGDKRYMVIDGSMTEVIRPCLYD AYHHIDLACPSQHEDTQKFVFDVVGPVCESADFLGKNRLMSTPHPGCGVAIFDVGAYCGSMASNYNLRIRPAEILISGSS SRLIRKPDTYEDLMRPYDPI |
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