Gene
| Gene Model ID | pfu_aug2.0_486.1_20830 |
|---|---|
| Locus | scaffold486.1 : 149320 ... 163965 : - |
| To GenomeBrowser | scaffold486.1:149320..163965 |
| Genes list of scaffold | scaffold486.1 |
| Synonym | pfu_aug1.0_6.1_57882 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| regulator of nonsense transcripts 1 | GO:0000184 GO:0000785 GO:0003677 GO:0003682 GO:0004004 GO:0005524 GO:0005737 GO:0006260 GO:0006281 GO:0008270 GO:0009048 GO:0035145 GO:0044530 GO:0044822 GO:0071044 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_486.1_20830.t1 | 2 | 1 | UPF1_Zn_bind | 101 | 252 | 0.0 | 248.8 | 0.0 | 0.0 | 248.4 |
| pfu_aug2.0_486.1_20830.t1 | 2 | 1 | AAA_30 | 370 | 417 | 1.2e-11 | 44.6 | 6.2 | 4400.0 | -3.0 |
| pfu_aug2.0_486.1_20830.t1 | 1 | 1 | AAA_11 | 450 | 652 | 0.0 | 182.0 | 0.0 | 0.0 | 181.3 |
| pfu_aug2.0_486.1_20830.t1 | 1 | 1 | ResIII | 450 | 585 | 1.8e-07 | 31.2 | 5.4e-10 | 3.8e-07 | 30.1 |
| pfu_aug2.0_486.1_20830.t1 | 2 | 2 | AAA_30 | 451 | 649 | 1.2e-11 | 44.6 | 8.1e-13 | 5.7e-10 | 39.1 |
| pfu_aug2.0_486.1_20830.t1 | 1 | 1 | AAA_19 | 458 | 514 | 4.1e-14 | 52.0 | 1.3e-16 | 9.0e-14 | 50.9 |
| pfu_aug2.0_486.1_20830.t1 | 2 | 2 | UPF1_Zn_bind | 481 | 508 | 0.0 | 248.8 | 0.9 | 630.0 | -0.2 |
| pfu_aug2.0_486.1_20830.t1 | 2 | 1 | AAA_12 | 660 | 867 | 0.0 | 192.0 | 0.0 | 0.0 | 190.2 |
| pfu_aug2.0_486.1_20830.t1 | 2 | 2 | AAA_12 | 1103 | 1129 | 0.0 | 192.0 | 3.0 | 2100.0 | -2.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_486.1_20830.t1 | gi|524883905|ref|XP_005098578.1| | PREDICTED: regulator of nonsense transcripts 1-like isoform X2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_486.1_20830.t1 | gi|663283103|ref|XP_008499153.1| | PREDICTED: regulator of nonsense transcripts 1 [Calypte anna] | 0.0 |
| pfu_aug2.0_486.1_20830.t1 | gi|148223321|ref|NP_001085862.1| | MGC80941 protein [Xenopus laevis] | 0.0 |
| pfu_aug2.0_486.1_20830.t1 | gi|512814896|ref|XP_002938872.2| | PREDICTED: regulator of nonsense transcripts 1 [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_486.1_20830.t1 | gi|530564928|ref|XP_005279035.1| | PREDICTED: regulator of nonsense transcripts 1 [Chrysemys picta bellii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_486.1_20830.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_486.1_20830.t1 atgagtgtggacgcatatgcaccgaactcccaaacgttgacgttccttgacaccgaggacgatttgatcggtgctgacac acaaggaactgaatttgattttaccgattttactctaccatctcagactcaatctcaaactcaagcatctcagattgagc caggaacaaaccaggttaatggaccagaggtacctgttcaaaatggattggatcacattactacagttacccaggctgtg gctgagctccagtttgaggaggaagaagaagaacaatttatgatgaaagatttacctaaacatgcttgctcttattgtgg aattcatgatccggcatgtgtggtgttctgtaattctacaaagaagtggttctgtaatggcagggggaatacatccggaa gccatatcatcaatcatctggtgagggccaaagccaaggaagtgactttacacaaggatggtcccctgggagagactgtc ttggaatgctacaactgtggatgtaggaacgtgttcttgttgggctttattccagccaaggcagattctgtggtcgtgtt actgtgccgtcaaccttgtgcaactctgacaaacctgaaggatatgaattgggaccctacacagtggcagccattgatcc aggacagacagttcttaccttggttagtaaaggtcccctctgaccaggagcagctgaggagtcgtcagatctccgcccag cagatcaacaaactggaggagctatggaaggacaaccctgaggccacactggaggatctggaaaaaccaggggtggatga ggagccacaacaagtccttctcagatatgatgatgcctatcagtaccagaatatttttggaccacttgtaaagcttgagg cagattatgacaagaaacttaaggaatcccagacccaggataacatcgtggtcagatgggacgtaggactgaacaagaag aggatagcatactttcaccttcctaaagctaatgatgagatgaagctgatgcatggagatgagttacgagtgagatataa cggagaactccacaagccgtggtctggagtaggtcatgtcatcaaaatccctgacaaccatagcgatgaagtagccatag agctgaagagtaatgcaggagtaccagttgaatgtactcacaactttgttgttgactttgtgtggaaatcaacatcattt gatagaatgcaagcagccctgaaaacatttgcggttgatgagacatcagtatgggggtacatctaccacaaactcctcgg gcacgaggtggaggatgtagtcattaagtgtcagctaccaaagcgatttagtgtccccaatctaccagaactgaaccatt cacaggtgtatgctgttaagactgtactacagaggcctctcagtcttattcagggtcccccaggaacaggtaagactgtg acatcagcgaccatagtgtaccacctggccaaacagaataacggtcaagttcttgtgtgtgctccatctaacatcgctgt cgaccagcttacagagaaaatacacaagactggactcaaggttgtacgtttgtgtgctaagagcagagaagctattgatt ctcctgtgtccttcctggctctacataatcagatcagaaacatggaaagtgtaccagaactacaaaagcttcagcaactg aaagatgagactggcgagctctcatctactgatgaaaaacgttatagatccctgaagaagcagtgtgagagggaactgct acagcatgcggacgttatttgctgtacatgtgtgggtacaggtgaccccagactggccaaaatgcagttccgttctgtac tgattgacgagagcactcaggccacagaaccagagtgtatgattcctgtaattcttggttgtagacagttgatattggtg ggagatcactgccagctgggccctgtggttatgtgtaagaaagctgcccgggctgggctatctcagtcactgtttgaacg tctagttgtactggggattcgccctatacgcctgcaggtccagtacagaatgcacccatctctcagtgcatttccttcta acatcttctatgaaggctccttacagaatggtgtctctccagctgacagaagcagaaagaaccttgacataccatggcct caggcagataaacctatgtttttctacactacatcaggacaagaggagatatctagttcaggaacatcctaccttaatag gtttgtagccagtatgtcccctttgaattctagaactgaggcagccaatgttgaaaagatcgctacaaggttcctacgat ccaatgtcaaacccgagcagattggtatcatcacaccttacgagggccagagagcctacattgtccagtacatgcagtac agtggatcgcttaacaagaagctctatcaggagattgaagttgcaagtgtggatgcttttcaaggaagagagaaggattt tattattctctcatgtgtacgatccaatgaacatcaaggaattggtttcctaaatgatccaagacgtctgaatgtggcac ttactagagcgaaatacggaataatcattgtagggaatcccaaagttctatcaaagcaacctctatggaaccatcttttg acatactacaaagaacagaaatgtcttgtggagggacctctaaacaacttgaaggaaagcatgattcagttcagcaagcc taggaaacttgtcaactcaaccaaccctggtggtagatttatgagtaacattatgtttgatgccagagaagtattgattc caggcagcgtttatgatagaaaccgttcctacaatgagccggtagtgaggacccatgatcagctgagttacataggccca gagagagcctactcgggcccagccttgaacatcccagtacccgtcaatatgttcataccacccatgcctccaacattcaa tggtcatcaaccagtaaatatgggtggaagaggaatgcccaatgcacgtggaggtcgtgggggcagaggtcgtcaaggtc gtcctcctcggtacagcagcactcagtcacagggcatgtcacagagtcagatgtcccagagccagggaagccaggatatc tctcagcccttctctcaaggccctctcacacagggtcatatgtcgatgagtcagcccttcaacatgagtcaacctgggct gtctgggctctcccagccagagctgtcacaagacagcttcttggtggatgacttcaaatcacaggcagatgccatgttgt cacaggactccacctaccaaggcgatagaatgttctacgcttcacaactatcacaggcagtgtctatggagcacaaacaa gcctgccagtactgcagttggcctcatgatctgagctgctactggtgccctgaacaaacatggaatgacgacataacaat ccatatagaggtctctatggagctatggaatatcttattgccaacaaatacaggggccaggaagggcactccagaatccc atgagggctggcggcaaatggcttggcatttgtttgttccgacgtga |
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Protein
| Protein ID | pfu_aug2.0_486.1_20830.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_486.1_20830.t1 MSVDAYAPNSQTLTFLDTEDDLIGADTQGTEFDFTDFTLPSQTQSQTQASQIEPGTNQVNGPEVPVQNGLDHITTVTQAV AELQFEEEEEEQFMMKDLPKHACSYCGIHDPACVVFCNSTKKWFCNGRGNTSGSHIINHLVRAKAKEVTLHKDGPLGETV LECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCATLTNLKDMNWDPTQWQPLIQDRQFLPWLVKVPSDQEQLRSRQISAQ QINKLEELWKDNPEATLEDLEKPGVDEEPQQVLLRYDDAYQYQNIFGPLVKLEADYDKKLKESQTQDNIVVRWDVGLNKK RIAYFHLPKANDEMKLMHGDELRVRYNGELHKPWSGVGHVIKIPDNHSDEVAIELKSNAGVPVECTHNFVVDFVWKSTSF DRMQAALKTFAVDETSVWGYIYHKLLGHEVEDVVIKCQLPKRFSVPNLPELNHSQVYAVKTVLQRPLSLIQGPPGTGKTV TSATIVYHLAKQNNGQVLVCAPSNIAVDQLTEKIHKTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMESVPELQKLQQL KDETGELSSTDEKRYRSLKKQCERELLQHADVICCTCVGTGDPRLAKMQFRSVLIDESTQATEPECMIPVILGCRQLILV GDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPIRLQVQYRMHPSLSAFPSNIFYEGSLQNGVSPADRSRKNLDIPWP QADKPMFFYTTSGQEEISSSGTSYLNRFVASMSPLNSRTEAANVEKIATRFLRSNVKPEQIGIITPYEGQRAYIVQYMQY SGSLNKKLYQEIEVASVDAFQGREKDFIILSCVRSNEHQGIGFLNDPRRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLL TYYKEQKCLVEGPLNNLKESMIQFSKPRKLVNSTNPGGRFMSNIMFDAREVLIPGSVYDRNRSYNEPVVRTHDQLSYIGP ERAYSGPALNIPVPVNMFIPPMPPTFNGHQPVNMGGRGMPNARGGRGGRGRQGRPPRYSSTQSQGMSQSQMSQSQGSQDI SQPFSQGPLTQGHMSMSQPFNMSQPGLSGLSQPELSQDSFLVDDFKSQADAMLSQDSTYQGDRMFYASQLSQAVSMEHKQ ACQYCSWPHDLSCYWCPEQTWNDDITIHIEVSMELWNILLPTNTGARKGTPESHEGWRQMAWHLFVPT |
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