Gene
| Gene Model ID | pfu_aug2.0_49.1_30069 |
|---|---|
| Locus | scaffold49.1 : 95556 ... 117028 : + |
| To GenomeBrowser | scaffold49.1:95556..117028 |
| Genes list of scaffold | scaffold49.1 |
| Synonym | pfu_aug1.0_316.1_58071 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_49.1_30069.t1 | 9 | 1 | Sgf11 | 6 | 17 | 2.3e-10 | 39.5 | 0.04 | 35.0 | 3.8 |
| pfu_aug2.0_49.1_30069.t1 | 10 | 1 | zf-C2HC_2 | 8 | 30 | 0.0 | 304.1 | 4.0e-09 | 3.5e-06 | 26.5 |
| pfu_aug2.0_49.1_30069.t1 | 10 | 1 | zf-C2H2 | 10 | 22 | 1.8e-10 | 40.4 | 0.073 | 64.0 | 4.2 |
| pfu_aug2.0_49.1_30069.t1 | 8 | 1 | Rad50_zn_hook | 10 | 20 | 3.2e-07 | 29.6 | 0.0012 | 1.0 | 8.8 |
| pfu_aug2.0_49.1_30069.t1 | 8 | 2 | Rad50_zn_hook | 66 | 94 | 3.2e-07 | 29.6 | 0.04 | 35.0 | 3.9 |
| pfu_aug2.0_49.1_30069.t1 | 9 | 2 | Sgf11 | 79 | 95 | 2.3e-10 | 39.5 | 0.00021 | 0.18 | 11.1 |
| pfu_aug2.0_49.1_30069.t1 | 10 | 2 | zf-C2HC_2 | 80 | 104 | 0.0 | 304.1 | 6.2e-14 | 5.4e-11 | 41.8 |
| pfu_aug2.0_49.1_30069.t1 | 10 | 2 | zf-C2H2 | 83 | 103 | 1.8e-10 | 40.4 | 4.2e-05 | 0.036 | 14.3 |
| pfu_aug2.0_49.1_30069.t1 | 10 | 3 | zf-C2HC_2 | 178 | 199 | 0.0 | 304.1 | 7.1e-09 | 6.2e-06 | 25.7 |
| pfu_aug2.0_49.1_30069.t1 | 10 | 3 | zf-C2H2 | 180 | 191 | 1.8e-10 | 40.4 | 0.45 | 390.0 | 1.7 |
| pfu_aug2.0_49.1_30069.t1 | 8 | 3 | Rad50_zn_hook | 180 | 190 | 3.2e-07 | 29.6 | 0.07 | 61.0 | 3.1 |
| pfu_aug2.0_49.1_30069.t1 | 9 | 3 | Sgf11 | 246 | 274 | 2.3e-10 | 39.5 | 0.00018 | 0.16 | 11.2 |
| pfu_aug2.0_49.1_30069.t1 | 10 | 4 | zf-C2HC_2 | 247 | 271 | 0.0 | 304.1 | 3.3e-14 | 2.8e-11 | 42.7 |
| pfu_aug2.0_49.1_30069.t1 | 10 | 4 | zf-C2H2 | 250 | 270 | 1.8e-10 | 40.4 | 0.00013 | 0.11 | 12.8 |
| pfu_aug2.0_49.1_30069.t1 | 8 | 4 | Rad50_zn_hook | 251 | 261 | 3.2e-07 | 29.6 | 9.6 | 8400.0 | -3.7 |
| pfu_aug2.0_49.1_30069.t1 | 9 | 4 | Sgf11 | 316 | 340 | 2.3e-10 | 39.5 | 0.065 | 57.0 | 3.1 |
| pfu_aug2.0_49.1_30069.t1 | 10 | 5 | zf-C2HC_2 | 317 | 338 | 0.0 | 304.1 | 1.5e-09 | 1.3e-06 | 27.8 |
| pfu_aug2.0_49.1_30069.t1 | 10 | 5 | zf-C2H2 | 319 | 328 | 1.8e-10 | 40.4 | 1.9 | 1600.0 | -0.3 |
| pfu_aug2.0_49.1_30069.t1 | 8 | 5 | Rad50_zn_hook | 319 | 325 | 3.2e-07 | 29.6 | 0.41 | 350.0 | 0.7 |
| pfu_aug2.0_49.1_30069.t1 | 10 | 6 | zf-C2HC_2 | 386 | 410 | 0.0 | 304.1 | 2.5e-12 | 2.2e-09 | 36.7 |
| pfu_aug2.0_49.1_30069.t1 | 9 | 5 | Sgf11 | 386 | 401 | 2.3e-10 | 39.5 | 0.054 | 47.0 | 3.4 |
| pfu_aug2.0_49.1_30069.t1 | 10 | 6 | zf-C2H2 | 389 | 409 | 1.8e-10 | 40.4 | 0.028 | 24.0 | 5.5 |
| pfu_aug2.0_49.1_30069.t1 | 10 | 7 | zf-C2HC_2 | 458 | 480 | 0.0 | 304.1 | 1.9e-10 | 1.6e-07 | 30.7 |
| pfu_aug2.0_49.1_30069.t1 | 9 | 6 | Sgf11 | 458 | 467 | 2.3e-10 | 39.5 | 0.1 | 90.0 | 2.5 |
| pfu_aug2.0_49.1_30069.t1 | 10 | 7 | zf-C2H2 | 460 | 472 | 1.8e-10 | 40.4 | 0.1 | 90.0 | 3.7 |
| pfu_aug2.0_49.1_30069.t1 | 8 | 6 | Rad50_zn_hook | 460 | 471 | 3.2e-07 | 29.6 | 0.0014 | 1.2 | 8.6 |
| pfu_aug2.0_49.1_30069.t1 | 9 | 7 | Sgf11 | 524 | 547 | 2.3e-10 | 39.5 | 0.00029 | 0.25 | 10.6 |
| pfu_aug2.0_49.1_30069.t1 | 10 | 8 | zf-C2HC_2 | 526 | 550 | 0.0 | 304.1 | 8.5e-14 | 7.4e-11 | 41.4 |
| pfu_aug2.0_49.1_30069.t1 | 10 | 8 | zf-C2H2 | 529 | 549 | 1.8e-10 | 40.4 | 0.00059 | 0.51 | 10.7 |
| pfu_aug2.0_49.1_30069.t1 | 10 | 9 | zf-C2HC_2 | 576 | 598 | 0.0 | 304.1 | 4.9e-10 | 4.3e-07 | 29.4 |
| pfu_aug2.0_49.1_30069.t1 | 9 | 8 | Sgf11 | 576 | 585 | 2.3e-10 | 39.5 | 0.32 | 280.0 | 0.9 |
| pfu_aug2.0_49.1_30069.t1 | 10 | 9 | zf-C2H2 | 578 | 590 | 1.8e-10 | 40.4 | 0.081 | 71.0 | 4.0 |
| pfu_aug2.0_49.1_30069.t1 | 8 | 7 | Rad50_zn_hook | 578 | 589 | 3.2e-07 | 29.6 | 0.0019 | 1.6 | 8.2 |
| pfu_aug2.0_49.1_30069.t1 | 8 | 8 | Rad50_zn_hook | 638 | 662 | 3.2e-07 | 29.6 | 2.0 | 1800.0 | -1.5 |
| pfu_aug2.0_49.1_30069.t1 | 9 | 9 | Sgf11 | 647 | 661 | 2.3e-10 | 39.5 | 0.00072 | 0.63 | 9.4 |
| pfu_aug2.0_49.1_30069.t1 | 10 | 10 | zf-C2HC_2 | 648 | 672 | 0.0 | 304.1 | 4.0e-13 | 3.5e-10 | 39.2 |
| pfu_aug2.0_49.1_30069.t1 | 10 | 10 | zf-C2H2 | 651 | 671 | 1.8e-10 | 40.4 | 0.0025 | 2.2 | 8.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_49.1_30069.t1 | gi|524869989|ref|XP_005091781.1| | PREDICTED: zinc finger protein 474-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_49.1_30069.t1 | gi|676436436|ref|XP_009047882.1| | hypothetical protein LOTGIDRAFT_157421 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_49.1_30069.t1 | gi|585664857|ref|XP_006812092.1| | PREDICTED: zinc finger protein 474-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_49.1_30069.t1 | gi|390366069|ref|XP_003730959.1| | 0.0 | |
| pfu_aug2.0_49.1_30069.t1 | gi|390348929|ref|XP_782832.3| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_49.1_30069.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_49.1_30069.t1 atgcctgttccagctaagaaaacggtcgtttgttacatatgtggaagagaatttggctcacagtcagtttctattcacga acctcagtgtctcaaaaaatggcgagctgaaaatgatagattaccaaagggacaacgaagaaaaactccagttaaacctg aaatcttaccgtctattgctggagatggatcagataaggagagatttaatgaggcagcatggcagagtgcgcagtcccag ttattgccttgtcctaactgtggtagaacattcgcccctgatcgtctatcggttcaccagagaagctgtaaaactggaaa acaagttcaaacacttaaaaaggttaccatcggagaaacgccttcatctaacgacagaccacgcactacgacagtttcaa atccaaaaatagtcacacaggaaaactctaacaaggatcaggcaagaccagggatgggagacaaagagggaacattcaca tcaccgaataaaagtccacccaaggccaaagtaccggcaggaccaagctttgttctctgctacatatgtggacagaaatt tgggagcaagtcaatttccatacatgaaccacaatgtctggagaaatggaaaattgagaatgctaaactccctaaaggtc agcgtcgtaaggagcctgtgaaacccaccgttgtatcttctagtggtcgttatgatgtggacgtcatgaacgaagcagct tggcagagtgcccaatcacagctcattccgtgtgatggctgtggacgcacatttgctcctgaccgccttgctgtccatca aagatcctgtaaaggaactggtggacctaagggaaaaggagcctcagcagctgctgcagggcccactggaccagccagga cccagggaactccccctggctctacaaccaaaccaaagaaagaggcagcacctgccaagccgaactttgtgttgtgttat atctgtggtaggaaatatgggtcagcatctatagctgttcatgaacctcagtgcttagagaagtggaaaatagagaatga cagcttacccaagtctcagaggaggccgttacctaaaaaacccgaggtgctaactgctgctggggagtatgacgtagagg ccatgaatgaggcagcctggcagagctctcaggcccagcttataccctgtgatagatgtggacgacgctttgctagtgac agactccctgtacatcagagaagctgtaaaggtacaggaggaccaggtgctaaggctggtgctacagcaggggcagggac aggcgggcctgctaacagtacccctggatccacctctgataacctaaagcccacacctcgtgataaaagtcctgacaaag gtggtccaaaaactgtggtctgttacatctgtggtagagagtttggttctaagtcaattagtatacatgagcctcagtgt ttggagaaatggaaaaatgaaaacaacaagctccctaaggagagaaggcgacctctacccaagaaaccagagacaggggg acaaccacttacaagggaacagatgaacgaggcagcctgggagaatgcaaaaaatcagctcattccatgtgagaactgtg gacgacgatttgctcctgacagactggacgtacacctgagggtgtgtaagcccaagcccgggcaaggaccacccaaaatg gaagagaagtcccaggctccagccccggcaatgaggagacctcccactatggtgtgttacatttgtggacgtgagtttgg tagcaagtcaatatctatacatgagcctcagtgtcttgagaaatggaagatagagaacagtaagcttcctaaggaacaga gacgaccagagcccaagaaacctgaagtccgcaccattggagctaaaggctcctatgatgtagatgccatgaatgaagca gcttatgagagtgccaaggcccagctgctgaaatgtgagaactgtggacgaacatttgccccggatcgtctgccagtaca tcagagaagctgtagacccaagcctcctaaggagtaa |
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Protein
| Protein ID | pfu_aug2.0_49.1_30069.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_49.1_30069.t1 MPVPAKKTVVCYICGREFGSQSVSIHEPQCLKKWRAENDRLPKGQRRKTPVKPEILPSIAGDGSDKERFNEAAWQSAQSQ LLPCPNCGRTFAPDRLSVHQRSCKTGKQVQTLKKVTIGETPSSNDRPRTTTVSNPKIVTQENSNKDQARPGMGDKEGTFT SPNKSPPKAKVPAGPSFVLCYICGQKFGSKSISIHEPQCLEKWKIENAKLPKGQRRKEPVKPTVVSSSGRYDVDVMNEAA WQSAQSQLIPCDGCGRTFAPDRLAVHQRSCKGTGGPKGKGASAAAAGPTGPARTQGTPPGSTTKPKKEAAPAKPNFVLCY ICGRKYGSASIAVHEPQCLEKWKIENDSLPKSQRRPLPKKPEVLTAAGEYDVEAMNEAAWQSSQAQLIPCDRCGRRFASD RLPVHQRSCKGTGGPGAKAGATAGAGTGGPANSTPGSTSDNLKPTPRDKSPDKGGPKTVVCYICGREFGSKSISIHEPQC LEKWKNENNKLPKERRRPLPKKPETGGQPLTREQMNEAAWENAKNQLIPCENCGRRFAPDRLDVHLRVCKPKPGQGPPKM EEKSQAPAPAMRRPPTMVCYICGREFGSKSISIHEPQCLEKWKIENSKLPKEQRRPEPKKPEVRTIGAKGSYDVDAMNEA AYESAKAQLLKCENCGRTFAPDRLPVHQRSCRPKPPKE |
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