Gene
| Gene Model ID | pfu_aug2.0_49.1_30085 |
|---|---|
| Locus | scaffold49.1 : 484175 ... 555984 : + |
| To GenomeBrowser | scaffold49.1:484175..555984 |
| Genes list of scaffold | scaffold49.1 |
| Synonym | pfu_aug1.0_3028.1_23147 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_49.1_30085.t2 | 2 | 1 | LIM | 63 | 78 | 3.5e-13 | 49.3 | 0.43 | 2100.0 | -1.2 |
| pfu_aug2.0_49.1_30085.t2 | 2 | 1 | Exo_endo_phos_2 | 163 | 259 | 2.5e-09 | 36.7 | 5.0e-13 | 2.5e-09 | 36.7 |
| pfu_aug2.0_49.1_30085.t2 | 2 | 2 | Exo_endo_phos_2 | 307 | 390 | 2.5e-09 | 36.7 | 0.046 | 230.0 | 1.4 |
| pfu_aug2.0_49.1_30085.t2 | 2 | 2 | LIM | 530 | 585 | 3.5e-13 | 49.3 | 8.1e-17 | 4.0e-13 | 49.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_49.1_30085.t2 | gi|147900853|ref|NP_001079705.1| | LIM domain transcription factor LMO4-B [Xenopus laevis] | 3.0e-27 |
| pfu_aug2.0_49.1_30085.t2 | gi|148224772|ref|NP_001079179.1| | LIM domain transcription factor LMO4-A [Xenopus laevis] | 1.0e-26 |
Transcript
| Transcript ID | pfu_aug2.0_49.1_30085.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_49.1_30085.t1 atggattattcgcaaagactcaaacagctaaagcttccaacactcaagtataggcgactaagaggtgacatgatagagac ttttaagatattgagaggagtttatgttcccgaggtggcaagcaatatacttgtattggatgaaacatcaagaacaaggg gaaatgacttaaaattgaagaaatttcactgtaataagaacatcaggaaatattcttttacacgccgcattacagacaca tggaacagcctgccaaatgaagtgataaaagctaagtctgtgaaacactttgaaatcgcacttgatagacactgggaaca tcaggatgtgaagtttgactatacagtggacattaacacacaatccggaagtcacaaaatcacggtgattggtccgcttt tcttctctttccagaagagaagaatagtggatcatcgatcaccgcaactagtgaagatggtgtcatcactagtagaacag aaacaccttgacgaacttaagaagtcattggacataatcgatctaaacaacatcactaacaatataatcactggagactt caactgcccagacacagattggaacttagaaacagcaaaaggaccagaaagagaaatacagcaagggctcgcaaacgtca tgaatgcaaataatctcactcaaaaccatgaacatcccaaaagagaggataaccttttggacttggtctttgtttccaac ccaagcttagtaaaatcgtccagacatgaaccaggcatatcagaccacgacactgtaataacagatatggatacaaaggt gcgctacaaccgaacaccaaccacaaagtgctatgtatatagtaaagcaaattgggaaaatgtcaataaagacctagagc aacttcaaaggacactagaagctaacaaccaaaagaaagactcggtacaacaactgtggtcaacattcaaagcagaactt ttcaaaactatggacgcaaacatacccaacaaagagataagatcaaggaagatcataccttacagatacatagacgatgt gttgtccatcaataatccaaaattcgcggattacctcagcagaatctatccttcggagcttgaagtcaaagaaactacag agacaaataattcaacatcccatttggacacaatgttgtcctacgacactgatggtatcatgaacgcctcactctatgac aaacgtgacgacttcaatttcacaaacattccttctctgagtagcatcataccttcatcgcctgcttatggcgtgttcat atctcagttgatacgctatgccagagcaagtaatagtgattctgtagcaatagtaattctaggtaatagtgattctgtag caatagtaattctaggtaatagtgattctgtagcaatagtaattctaggtaatagtgattttgtagcaatagtaattcta ggtaatagtgattctgtagcaatagtaattctaggtaatagtgattctgtagcgacagtaattcgagtagcctgtgttcc agtgatgactaatggaagtgaagaaagttccatgatggtaaacggaaatcttagcggaagtgacgtcagctttaatggtg gcgccgtcaaagcatgcggaggttgcggaggaaggatccatgataggtttctgttacacgctatggaccgatattggcat acagaatgtctcaagtgctcttgttgtcagacaacgctagaacagttgggaacttgcttcgctcggtcgggaatgatact gtgcaaaaacgattatatgagactttttggttccggcggatcatgcgcttcctgtggacaaaatattcctgcgcacgaaa tggtgatgcgtgtccatggcaacacttatcatttaaagtgctttacttgtgtggcgtgcaatactcagttgacacccgga aatcggtatgccattataaatggtaacattgtttgtgaacaggactacccgaaagtgaccaaagcccaggtcggcggaag ttcacggaattccacgaagatacacggaatgatgacaaaaatttga |
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| Transcript ID | pfu_aug2.0_49.1_30085.t2 |
| Definition | - |
>pfu_aug2.0_49.1_30085.t2 atggattattcgcaaagactcaaacagctaaagcttccaacactcaagtataggcgactaagaggtgacatgatagagac ttttaagatattgagaggagtttatgttcccgaggtggcaagcaatatacttgtattggatgaaacatcaagaacaaggg gaaatgacttaaaattgaagaaatttcactgtaataagaacatcaggaaatattcttttacacgccgcattacagacaca tggaacagcctgccaaatgaagtgataaaagctaagtctgtgaaacactttgaaatcgcacttgatagacactgggaaca tcaggatgtgaagtttgactatacagtggacattaacacacaatccggaagtcacaaaatcacggtgattggtccgcttt tcttctctttccagaagagaagaatagtggatcatcgatcaccgcaactagtgaagatggtgtcatcactagtagaacag aaacaccttgacgaacttaagaagtcattggacataatcgatctaaacaacatcactaacaatataatcactggagactt caactgcccagacacagattggaacttagaaacagcaaaaggaccagaaagagaaatacagcaagggctcgcaaacgtca tgaatgcaaataatctcactcaaaaccatgaacatcccaaaagagaggataaccttttggacttggtctttgtttccaac ccaagcttagtaaaatcgtccagacatgaaccaggcatatcagaccacgacactgtaataacagatatggatacaaaggt gcgctacaaccgaacaccaaccacaaagtgctatgtatatagtaaagcaaattgggaaaatgtcaataaagacctagagc aacttcaaaggacactagaagctaacaaccaaaagaaagactcggtacaacaactgtggtcaacattcaaagcagaactt ttcaaaactatggacgcaaacatacccaacaaagagataagatcaaggaagatcataccttacagatacatagacgatgt gttgtccatcaataatccaaaattcgcggattacctcagcagaatctatccttcggagcttgaagtcaaagaaactacag agacaaataattcaacatcccatttggacacaatgttgtcctacgacactgatggtatcatgaacgcctcactctatgac aaacgtgacgacttcaatttcacaaacattccttctctgagtagcatcataccttcatcgcctgcttatggcgtgttcat atctcagttgatacgctatgccagagcaagtaatagtgattctgtagcaatagtaattctaggtaatagtgattctgtag caatagtaattctaggtaatagtgattctgtagcaatagtaattctaggtaatagtgattttgtagcaatagtaattcta ggtaatagtgattctgtagcaatagtaattctaggtaatagtgattctgtagcgacagtaattcgaggaagtgaagaaag ttccatgatggtaaacggaaatcttagcggaagtgacgtcagctttaatggtggcgccgtcaaagcatgcggaggttgcg gaggaaggatccatgataggtttctgttacacgctatggaccgatattggcatacagaatgtctcaagtgctcttgttgt cagacaacgctagaacagttgggaacttgcttcgctcggtcgggaatgatactgtgcaaaaacgattatatgaggtag |
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Protein
| Protein ID | pfu_aug2.0_49.1_30085.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_49.1_30085.t1 MDYSQRLKQLKLPTLKYRRLRGDMIETFKILRGVYVPEVASNILVLDETSRTRGNDLKLKKFHCNKNIRKYSFTRRITDT WNSLPNEVIKAKSVKHFEIALDRHWEHQDVKFDYTVDINTQSGSHKITVIGPLFFSFQKRRIVDHRSPQLVKMVSSLVEQ KHLDELKKSLDIIDLNNITNNIITGDFNCPDTDWNLETAKGPEREIQQGLANVMNANNLTQNHEHPKREDNLLDLVFVSN PSLVKSSRHEPGISDHDTVITDMDTKVRYNRTPTTKCYVYSKANWENVNKDLEQLQRTLEANNQKKDSVQQLWSTFKAEL FKTMDANIPNKEIRSRKIIPYRYIDDVLSINNPKFADYLSRIYPSELEVKETTETNNSTSHLDTMLSYDTDGIMNASLYD KRDDFNFTNIPSLSSIIPSSPAYGVFISQLIRYARASNSDSVAIVILGNSDSVAIVILGNSDSVAIVILGNSDFVAIVIL GNSDSVAIVILGNSDSVATVIRVACVPVMTNGSEESSMMVNGNLSGSDVSFNGGAVKACGGCGGRIHDRFLLHAMDRYWH TECLKCSCCQTTLEQLGTCFARSGMILCKNDYMRLFGSGGSCASCGQNIPAHEMVMRVHGNTYHLKCFTCVACNTQLTPG NRYAIINGNIVCEQDYPKVTKAQVGGSSRNSTKIHGMMTKI |
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| Protein ID | pfu_aug2.0_49.1_30085.t2 |
| Definition | - |
>pfu_aug2.0_49.1_30085.t2 MDYSQRLKQLKLPTLKYRRLRGDMIETFKILRGVYVPEVASNILVLDETSRTRGNDLKLKKFHCNKNIRKYSFTRRITDT WNSLPNEVIKAKSVKHFEIALDRHWEHQDVKFDYTVDINTQSGSHKITVIGPLFFSFQKRRIVDHRSPQLVKMVSSLVEQ KHLDELKKSLDIIDLNNITNNIITGDFNCPDTDWNLETAKGPEREIQQGLANVMNANNLTQNHEHPKREDNLLDLVFVSN PSLVKSSRHEPGISDHDTVITDMDTKVRYNRTPTTKCYVYSKANWENVNKDLEQLQRTLEANNQKKDSVQQLWSTFKAEL FKTMDANIPNKEIRSRKIIPYRYIDDVLSINNPKFADYLSRIYPSELEVKETTETNNSTSHLDTMLSYDTDGIMNASLYD KRDDFNFTNIPSLSSIIPSSPAYGVFISQLIRYARASNSDSVAIVILGNSDSVAIVILGNSDSVAIVILGNSDFVAIVIL GNSDSVAIVILGNSDSVATVIRGSEESSMMVNGNLSGSDVSFNGGAVKACGGCGGRIHDRFLLHAMDRYWHTECLKCSCC QTTLEQLGTCFARSGMILCKNDYMR |
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