Gene
| Gene Model ID | pfu_aug2.0_4900.1_02674 |
|---|---|
| Locus | scaffold4900.1 : 3797 ... 14320 : + |
| To GenomeBrowser | scaffold4900.1:3797..14320 |
| Genes list of scaffold | scaffold4900.1 |
| Synonym | pfu_aug1.0_188.1_14875 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4900.1_02674.t1 | 2 | 1 | Fibrinogen_C | 6 | 35 | 3.7e-27 | 95.4 | 2.2e-07 | 0.0017 | 18.0 |
| pfu_aug2.0_4900.1_02674.t1 | 2 | 2 | Fibrinogen_C | 45 | 132 | 3.7e-27 | 95.4 | 9.0e-26 | 6.6e-22 | 78.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_4900.1_02674.t1 | gi|115618398|ref|XP_797824.2| | PREDICTED: ficolin-2-like [Strongylocentrotus purpuratus] | 5.0e-23 |
| pfu_aug2.0_4900.1_02674.t1 | gi|260792188|ref|XP_002591098.1| | hypothetical protein BRAFLDRAFT_253186 [Branchiostoma floridae] | 6.0e-23 |
| pfu_aug2.0_4900.1_02674.t1 | gi|260828911|ref|XP_002609406.1| | hypothetical protein BRAFLDRAFT_86503 [Branchiostoma floridae] | 8.0e-23 |
Transcript
| Transcript ID | pfu_aug2.0_4900.1_02674.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4900.1_02674.t1 atgttcccatatagcaagtccggtgtatatcagatctacccagcatctatagggattggagtacacgtgtactgtgacat ggccgagtcatgtggagggtggacgtataaaaacttttctattctcattaaaggcaacgacattatacatcaaataacgg ccaacaaaaatcatgagttgctgatagtgatggaggacttcgaccaaacagtgagatatgctcattacggaactttcttt atcggaaatgagaatgaaaagtacaaactaaatgtaacggggtacagcgggactgcaggtgatagtttagcctttcataa tggattgcccttcagcacctatgatcaagacaatgacagcgattcaaggaattgcgcagtcatctataaagtcggtcaga gtgcaagacttaagaaggcgctggtacaaggttgtagattggtccaataccatgccgagtgtccgtctggtgacattagg atcatatccacgggacatggtcattatccatatttgtcatttagtacgaaagaactctgtacaaaactaaatcagttcga gaaatcccgacgccttattaggggatggatagggtcagagaaaggggtgggaggaggggaagagagaggaagtgaaagga ggtgggagggaggaaggggctggatagggaaggtcatgaggcaggaagtgggggatgacggatggaggcgcggtagaggg gtggggtgggtaggagggggaatgagaatgtgtccatatcatttccgttattatttccggagctcgtaa |
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Protein
| Protein ID | pfu_aug2.0_4900.1_02674.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4900.1_02674.t1 MFPYSKSGVYQIYPASIGIGVHVYCDMAESCGGWTYKNFSILIKGNDIIHQITANKNHELLIVMEDFDQTVRYAHYGTFF IGNENEKYKLNVTGYSGTAGDSLAFHNGLPFSTYDQDNDSDSRNCAVIYKVGQSARLKKALVQGCRLVQYHAECPSGDIR IISTGHGHYPYLSFSTKELCTKLNQFEKSRRLIRGWIGSEKGVGGGEERGSERRWEGGRGWIGKVMRQEVGDDGWRRGRG VGWVGGGMRMCPYHFRYYFRSS |
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