Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_494.1_14219
Locus scaffold494.1 : 7496 ... 12868 : +
To GenomeBrowser scaffold494.1:7496..12868
Genes list of scaffold scaffold494.1
Synonym pfu_aug1.0_16951.1_61662

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_494.1_14219.t1 3 1 Mab-21 88 209 4.6e-10 39.1 9.7e-06 0.14 11.2
pfu_aug2.0_494.1_14219.t1 3 2 Mab-21 258 276 4.6e-10 39.1 0.092 1400.0 -1.9
pfu_aug2.0_494.1_14219.t1 3 3 Mab-21 290 440 4.6e-10 39.1 5.5e-10 8.2e-06 25.1

Transcript
Transcript IDpfu_aug2.0_494.1_14219.t1
Definition-
>pfu_aug2.0_494.1_14219.t1
atggcgagacaaggggatataggatcaagacttaacgaatggaggtccccggtttacgagctaggtccatcagaaagcgg
catgaccccgcagataaaggcagccataggggaaataaatatagcagatgatgcatggatgaacacttgtggtgcaattg
acaaggttcttggtgtggtaatttcagagttcagaaaggtagcttcatcacaatatccaggtttggttattcaagacgca
gtcatcagacaagggagttcccgagagggactgaaagtcagagaccctgttgaatatgattttatgctgccattcaaaat
tgaaggagtgcatcttgtacactatgatgtatatgactgcaatggtagaattctcccgggtcttctgaaaatgaaggtac
aaaatgatcacgagatgaggggaaggttttcttggatgaatagacttggtatcattgatgcttcaggcatgctagattct
gaaaacatacagaaaacactcttcacatcgatacttgacaaatccttaaataaaatcaacgaacatctagctcgcgaaag
cagccggacaggcgatggttaccgcgttaatcgatctacaaattcaaccaactttcaactaaccgttcagttcgagggtt
cgattcgaggagttcatgatgcgttcggtttccccacaagaaacgaaagtttttcaatactgcaaagccaaaacatctcg
accattgatattgactttgtacctggaatgttgatcggaagggacgtaattccaaatccatatagtgtcaaggagtatca
tcttgagacaatggtctgtgaaagatatgctgtaatgaaatggattaacaagaaaaacaccaacatcaaagaagccgaca
agtccctactttggaggaacagttcctccggttatgagaaacatgttctagacgttgctcgtcggaaccccagccaacgg
tatatactcacagcttgccgaattctgaaagcctatatagccaatgaaaaagcttatgggagctacaatgaccagcttgt
agcaatagtgaagtcatactatctgaagatgctctgcttctattgtatcgtatttttgaccgttccaaacagcgccaatc
gtctgagtggtgttaaagaagccctcggctacatgatagttttcctagagaagagcctgaatgcaggatacctgccccat
ttctttcacgggaatccatggctgtctgtcattcttccaggttgttattttgaggaagagtcggagaagtataatttatt
ttctgaagcaagtggcagtaccatacaacaggccagattaagcataaaaagactgaaggaaagattgcaaggactgttcc
tgagtgaacaatacttggaccaggaaaaaatcaagatgttcaccgacattttaagtcaagtttag

Protein
Protein IDpfu_aug2.0_494.1_14219.t1
Definition-
>pfu_aug2.0_494.1_14219.t1
MARQGDIGSRLNEWRSPVYELGPSESGMTPQIKAAIGEINIADDAWMNTCGAIDKVLGVVISEFRKVASSQYPGLVIQDA
VIRQGSSREGLKVRDPVEYDFMLPFKIEGVHLVHYDVYDCNGRILPGLLKMKVQNDHEMRGRFSWMNRLGIIDASGMLDS
ENIQKTLFTSILDKSLNKINEHLARESSRTGDGYRVNRSTNSTNFQLTVQFEGSIRGVHDAFGFPTRNESFSILQSQNIS
TIDIDFVPGMLIGRDVIPNPYSVKEYHLETMVCERYAVMKWINKKNTNIKEADKSLLWRNSSSGYEKHVLDVARRNPSQR
YILTACRILKAYIANEKAYGSYNDQLVAIVKSYYLKMLCFYCIVFLTVPNSANRLSGVKEALGYMIVFLEKSLNAGYLPH
FFHGNPWLSVILPGCYFEEESEKYNLFSEASGSTIQQARLSIKRLKERLQGLFLSEQYLDQEKIKMFTDILSQV

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495