Gene
| Gene Model ID | pfu_aug2.0_498.1_27477 |
|---|---|
| Locus | scaffold498.1 : 242656 ... 268645 : - |
| To GenomeBrowser | scaffold498.1:242656..268645 |
| Genes list of scaffold | scaffold498.1 |
| Synonym | pfu_aug1.0_111.1_36304 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_498.1_27477.t1 | 2 | 1 | PHD | 261 | 312 | 9.5e-06 | 25.2 | 1.9e-09 | 9.5e-06 | 25.2 |
| pfu_aug2.0_498.1_27477.t1 | 1 | 1 | Exo_endo_phos_2 | 871 | 992 | 2.9e-11 | 43.0 | 3.7e-14 | 1.8e-10 | 40.4 |
| pfu_aug2.0_498.1_27477.t1 | 2 | 2 | PHD | 1055 | 1070 | 9.5e-06 | 25.2 | 1.1 | 5500.0 | -2.9 |
| pfu_aug2.0_498.1_27477.t1 | 1 | 1 | Brix | 1184 | 1355 | 0.0 | 156.9 | 0.0 | 1.4013e-45 | 155.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_498.1_27477.t1 | gi|260823916|ref|XP_002606914.1| | hypothetical protein BRAFLDRAFT_60335 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_498.1_27477.t1 | gi|291236446|ref|XP_002738150.1| | PREDICTED: ribosome production factor 1-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_498.1_27477.t1 | gi|514757698|ref|XP_005022375.1| | PREDICTED: ribosome production factor 1 [Anas platyrhynchos] | 0.0 |
| pfu_aug2.0_498.1_27477.t1 | gi|686583620|ref|XP_009272407.1| | PREDICTED: ribosome production factor 1 [Aptenodytes forsteri] | 0.0 |
| pfu_aug2.0_498.1_27477.t1 | gi|632940595|ref|XP_007885402.1| | PREDICTED: ribosome production factor 1 [Callorhinchus milii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_498.1_27477.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_498.1_27477.t1 atgtacacaagacgctccatcaggatcaggaatgctcctacaccctactctccagcacagatagggaggaaaatcaacac tagcagatcatcaccacaaaatccgaaaagtaacaatgctgatgtatcatactcactgaacagaggaaaggcaataagga aaaaacttgaggccactgacagaccaagtatgtgtagcgtccaggtgaaaaaaggaggaaacatcatattagaactctca actgcggcatatgaaagcctgaaaggcaaaatgctactccactacagtgaccaagagacaagagctatcattaaggaaaa gagagacagatcaaatgcaatagttgaacacagcatcagtgtatacgcagaaaatatgcaagacaaattgtacacaataa acatgtaccacacaacttctaagatacttacaaatggaaaacacccagatatctgtgtagagcatataggagaaatacta tcaaatattgatacagaagaaatacaagacctaaacaatatcataagagaaaaatgtatggaaacactaacatgtaagaa cccacttcaaaaatctgaaaacctgaaacaacatgatcaagatgatcaagatggtaggaaaaatccacaatcaaaaaagg aattaacatatccaacagcaaaaaccaaaagtaaacagccacaaagcgtccataacattgccatcagtattatagaagag gcatcagagggaagaagcacagactcgcatgaccatgaggcacaagacagtaatggaacatgtccaatatgtattaaacc accagagacaaactcgatagaatgtgatgagtgcacactatggttccactatgcatgtgaacaaatgacaaaggaggaaa taaaggaacacgaggatgacccaaataaaatatacatatgtagcatgtgcaaatgcctagaccatgctcaaaccaataac aatgagcaaaacctaacaccatctccaaattggtcacaaaatacacaaattgcagctctacagacaaaattgagaagcaa catacgtaacccagacgaggaaaagcatcaaaatcctaacaccctaccccaaccagcatataacaaacaacttgacagag cggaaagaagcacagaaacaaagaacaattcagaaacaaaggtcctaaaaagtacaatcagtgtcagtaatagcactaat aaggaagtactagcaagcacaaccatcgacataaaccagtatggtccagacagtacaacaagagaaagaccggagataca aagtcaacaacaaaaccaacaacaaccaacagatgggcttatccttgctagcagaaaactagatagtacgacaggaaaaa gaaatgacacaaatgccaccaaacgaaaagacaaacggttccagctaacagatatggaaaagcaattagcatattgcaaa gcagaaataataagacttgaaaactgctgacagtatagaatagcaactaaaactaatctacaatcatcagaaaatgagaa ctgcacagaagagaacctcacagatgtacaacaagcgaatgaagaaatagctgcaactactaaaactccattcactggaa agagacagataacaagagatgaaaacgcaaacacgaaatcccccttacagcatgtacagaggaggacaattgaaaagacc ccatgcagagcagatgcagggacaatgcaaggaacattatcccacggccgggcctcaagccatactcattggacttggaa tataagcagatttgcaggaacaccattgcacagggcagagaggggcgctacaacaccagtactggagatggcaagcaaca gaccgccagcgtcaatagaaagacccaactcacggcagactccaacaacccaattgaactccatgatggggcacggcatg aaacacgaatataccagaggccagagacaaggaaggataacaatgcaaccaaagcagcatccaaggaggactacacacag agcaaacccggaaaaacgaatacaaaactcgagcagcgctacggcacatgataccaatcctacagacaaaccatcagaaa ccgatcactcccgttcagcggggaccaaatcatcctgtacaaacaaatctatggcatccaatctccagtcattcaccact gctaccaccactgctcccaacactgctcccaacactgccacccttaacataacaattccaaacccagactcacacacaac cacaaaaaatacaaatagtcactctcccaagactcttatctctgtagccagcctcaacattcaaaacatcaaaagcaaca tcccatatctagaaacactcctacaagataatgacatcatctgccttcaagaacactggctattcaactatgaacagaac tggataacaaaaaagttcccaaacctaacaatatacgtcaagtcaactgacgacgaagaaccaataagccatgcaaaaaa gatcagagggtatggaggagtcgcaattttagtcaacaacaacaacgatctaagcgacaacataaagacattgccagatg gaaaccaacgagtacaagcaatagagacaaaaatagatggctccaatacaatcatcatcaacgcatacatgccatgtaga aacaacttctccaaaataaatacaaccacatcctatgaagaaaacttagatgtaattggagaaatagtaacaaaacactc cacaacccacaacatcatactggtgggagacttcaatgcctcactcattagaaggacagaaacctcacaagacaagaagc taaaagaattcatacaggagcacagcttcatccacctgctagggtcagatgatcacccaaccttctaccaccataacggc aaagacacggcccaacttgattacatcttcctcaaatcaaaacatcccacatcacttaacaatctacaagatacacctca tgcatcctctcaacacctcagaccacaccacagtatcgattcacataggaataacaaacaatgcagtaccaatgacaaan gaatttacgcatatgtaacaacaacaacaataccgttcccacaagcaatcaaagcagacacacgaaacatgacacacaaa tacacatttgacaatacttttaaaacccgaggaagaccactgtgcaaccgatgtacatttggattggagtgtgtcaaact tacaggaaaagatatagaggcaatggacaaattccaaagaggtctcctcagacaactccaatctcttcctgatagatgtg ccaacatcccagtatacagccttgtaggagccaaaccaattagtgtcgtgctggatatcaaggcccaaatgcaggaacgg aaaaagagaaaacaggaagcagaagaaatgggggaaaaggccccgccaaagaaagtcccaaaaacaatagagaacatgag ggtgtttgatgaaacaatggtgaatccacaggacactgaggtaatgattgatgaagctcaggatgagatgtccagttact tcaacagagaaactcttcccaaaattcttataacaacatgtgatagaccttgcagtagaaccaacaaattttgtaaagaa ctaaggaatagtattccaaactcagagatttattacagaagaggacttgacctgaagaaaatcataccacaggcattatc cagagattttacagatctcattgtaataaacgaagacaggaaggaacctaatggtctagtcatgtcacatctaccagacg gtcctacagctcatttcaaactcagcagtctcaggttatcaacagaaataaggagggcaggtgacatgagtcagcacaga ccagaagtcattctcaacaattttaacacacgacttggtcattctgtgggtagaatgttggcctctcttttccaccatga tccccagtttagtggacgccgagttgttacatttcacaatcagagagacttcatattcttcagacatcatagatatgtat tccgaaactccaagaaagttgggctgaaggagcttggaccaagatttacactcaaactaaggtctttacagaaaggaaca tttgattccaaatttggagaatatgaatgggtgcacaagcgacatgaaatggagaccagcagaaggaaattcttcttgta g |
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Protein
| Protein ID | pfu_aug2.0_498.1_27477.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_498.1_27477.t1 MYTRRSIRIRNAPTPYSPAQIGRKINTSRSSPQNPKSNNADVSYSLNRGKAIRKKLEATDRPSMCSVQVKKGGNIILELS TAAYESLKGKMLLHYSDQETRAIIKEKRDRSNAIVEHSISVYAENMQDKLYTINMYHTTSKILTNGKHPDICVEHIGEIL SNIDTEEIQDLNNIIREKCMETLTCKNPLQKSENLKQHDQDDQDGRKNPQSKKELTYPTAKTKSKQPQSVHNIAISIIEE ASEGRSTDSHDHEAQDSNGTCPICIKPPETNSIECDECTLWFHYACEQMTKEEIKEHEDDPNKIYICSMCKCLDHAQTNN NEQNLTPSPNWSQNTQIAALQTKLRSNIRNPDEEKHQNPNTLPQPAYNKQLDRAERSTETKNNSETKVLKSTISVSNSTN KEVLASTTIDINQYGPDSTTRERPEIQSQQQNQQQPTDGLILASRKLDSTTGKRNDTNATKRKDKRFQLTDMEKQLAYCK AEIIRLENCXQYRIATKTNLQSSENENCTEENLTDVQQANEEIAATTKTPFTGKRQITRDENANTKSPLQHVQRRTIEKT PCRADAGTMQGTLSHGRASSHTHWTWNISRFAGTPLHRAERGATTPVLEMASNRPPASIERPNSRQTPTTQLNSMMGHGM KHEYTRGQRQGRITMQPKQHPRRTTHRANPEKRIQNSSSATAHDTNPTDKPSETDHSRSAGTKSSCTNKSMASNLQSFTT ATTTAPNTAPNTATLNITIPNPDSHTTTKNTNSHSPKTLISVASLNIQNIKSNIPYLETLLQDNDIICLQEHWLFNYEQN WITKKFPNLTIYVKSTDDEEPISHAKKIRGYGGVAILVNNNNDLSDNIKTLPDGNQRVQAIETKIDGSNTIIINAYMPCR NNFSKINTTTSYEENLDVIGEIVTKHSTTHNIILVGDFNASLIRRTETSQDKKLKEFIQEHSFIHLLGSDDHPTFYHHNG KDTAQLDYIFLKSKHPTSLNNLQDTPHASSQHLRPHHSIDSHRNNKQCSTNDKXIYAYVTTTTIPFPQAIKADTRNMTHK YTFDNTFKTRGRPLCNRCTFGLECVKLTGKDIEAMDKFQRGLLRQLQSLPDRCANIPVYSLVGAKPISVVLDIKAQMQER KKRKQEAEEMGEKAPPKKVPKTIENMRVFDETMVNPQDTEVMIDEAQDEMSSYFNRETLPKILITTCDRPCSRTNKFCKE LRNSIPNSEIYYRRGLDLKKIIPQALSRDFTDLIVINEDRKEPNGLVMSHLPDGPTAHFKLSSLRLSTEIRRAGDMSQHR PEVILNNFNTRLGHSVGRMLASLFHHDPQFSGRRVVTFHNQRDFIFFRHHRYVFRNSKKVGLKELGPRFTLKLRSLQKGT FDSKFGEYEWVHKRHEMETSRRKFFL |
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