Gene
| Gene Model ID | pfu_aug2.0_4996.1_22633 |
|---|---|
| Locus | scaffold4996.1 : 1 ... 24375 : + |
| To GenomeBrowser | scaffold4996.1:1..24375 |
| Genes list of scaffold | scaffold4996.1 |
| Synonym | pfu_aug1.0_610.1_15155 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4996.1_22633.t1 | 9 | 1 | TMF_TATA_bd | 11 | 79 | 1.4e-31 | 108.7 | 0.52 | 1300.0 | -1.0 |
| pfu_aug2.0_4996.1_22633.t1 | 10 | 1 | TMF_DNA_bd | 25 | 62 | 3.6e-18 | 65.1 | 0.059 | 150.0 | 2.3 |
| pfu_aug2.0_4996.1_22633.t1 | 10 | 2 | TMF_DNA_bd | 62 | 134 | 3.6e-18 | 65.1 | 1.5e-21 | 3.6e-18 | 65.1 |
| pfu_aug2.0_4996.1_22633.t1 | 9 | 2 | TMF_TATA_bd | 63 | 126 | 1.4e-31 | 108.7 | 0.14 | 350.0 | 0.9 |
| pfu_aug2.0_4996.1_22633.t1 | 9 | 3 | TMF_TATA_bd | 92 | 177 | 1.4e-31 | 108.7 | 6.0 | 15000.0 | -4.6 |
| pfu_aug2.0_4996.1_22633.t1 | 9 | 4 | TMF_TATA_bd | 137 | 242 | 1.4e-31 | 108.7 | 0.22 | 540.0 | 0.3 |
| pfu_aug2.0_4996.1_22633.t1 | 10 | 3 | TMF_DNA_bd | 138 | 177 | 3.6e-18 | 65.1 | 0.00018 | 0.45 | 10.3 |
| pfu_aug2.0_4996.1_22633.t1 | 10 | 4 | TMF_DNA_bd | 158 | 192 | 3.6e-18 | 65.1 | 0.019 | 48.0 | 3.8 |
| pfu_aug2.0_4996.1_22633.t1 | 9 | 5 | TMF_TATA_bd | 201 | 279 | 1.4e-31 | 108.7 | 2.1 | 5100.0 | -2.9 |
| pfu_aug2.0_4996.1_22633.t1 | 10 | 5 | TMF_DNA_bd | 211 | 256 | 3.6e-18 | 65.1 | 0.18 | 460.0 | 0.7 |
| pfu_aug2.0_4996.1_22633.t1 | 10 | 6 | TMF_DNA_bd | 238 | 288 | 3.6e-18 | 65.1 | 0.014 | 33.0 | 4.3 |
| pfu_aug2.0_4996.1_22633.t1 | 9 | 6 | TMF_TATA_bd | 284 | 396 | 1.4e-31 | 108.7 | 1.2 | 2900.0 | -2.1 |
| pfu_aug2.0_4996.1_22633.t1 | 10 | 7 | TMF_DNA_bd | 292 | 317 | 3.6e-18 | 65.1 | 0.16 | 400.0 | 0.8 |
| pfu_aug2.0_4996.1_22633.t1 | 10 | 8 | TMF_DNA_bd | 333 | 377 | 3.6e-18 | 65.1 | 4.3e-05 | 0.11 | 12.3 |
| pfu_aug2.0_4996.1_22633.t1 | 9 | 7 | TMF_TATA_bd | 334 | 408 | 1.4e-31 | 108.7 | 0.097 | 240.0 | 1.4 |
| pfu_aug2.0_4996.1_22633.t1 | 10 | 9 | TMF_DNA_bd | 382 | 443 | 3.6e-18 | 65.1 | 6.0 | 15000.0 | -5.0 |
| pfu_aug2.0_4996.1_22633.t1 | 9 | 8 | TMF_TATA_bd | 385 | 442 | 1.4e-31 | 108.7 | 1.2 | 3000.0 | -2.1 |
| pfu_aug2.0_4996.1_22633.t1 | 9 | 9 | TMF_TATA_bd | 493 | 606 | 1.4e-31 | 108.7 | 5.6e-35 | 1.4e-31 | 108.7 |
| pfu_aug2.0_4996.1_22633.t1 | 10 | 10 | TMF_DNA_bd | 509 | 576 | 3.6e-18 | 65.1 | 3.0e-05 | 0.075 | 12.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_4996.1_22633.t1 | gi|524872533|ref|XP_005093028.1| | PREDICTED: TATA element modulatory factor-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_4996.1_22633.t1 | gi|632955289|ref|XP_007893394.1| | PREDICTED: TATA element modulatory factor [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_4996.1_22633.t1 | gi|573885627|ref|XP_006630683.1| | PREDICTED: TATA element modulatory factor-like [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_4996.1_22633.t1 | gi|556975218|ref|XP_005995290.1| | PREDICTED: TATA element modulatory factor isoform X3 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_4996.1_22633.t1 | gi|556975212|ref|XP_005995288.1| | PREDICTED: TATA element modulatory factor isoform X1 [Latimeria chalumnae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_4996.1_22633.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4996.1_22633.t1 tcaactacagcaggtagaggaagctagagaggctgaactggaggacattaacaaggtcacaaccgagtttacacagagac tgtctgactcagagaaacgagtcaatcaggcaataagggaaaaagaggcggtcaaaaaacaacttcaaagggcccaagaa gacttggagaaaaagatcaaggacaagtctttacagaatcttataaaagagaaggaccagcagatagatgaattgatgca agaaggtgaaaagttatccaagcaacaactacaagtcaacaccataataaagaagttacgtgtaaaagaaaaagaaaatg agtctctcattacttctcaaaagaaaaaattagaagatcagaaatcagaattagatcacctacgtaaagtttgtgaatct aaggatgatctcgaaaagaaacaaactgaggcaataggccagctgaatgctgctgtacagagacaggaaagagaaatgtc aaagttaaagagtgatcatgacgatgcacaagaaagagtacggggccttcagaccgccttagataactcctacaaggaga tagcagatctacacagatcaaatgctgctcaggacagtaaagcccatgaagctgctcttagtgccgagatgcaggtccga gaagagctaaaaatacaactagaccacgagaggaaagctttcgtacaggagaaagaggcacttgtcatgcagattgaaga tttgagactgacactgtcaagaatggagaaagagcataatagaagggaagatatgctacgtcaagaaatatcagatttac aaaggcatttacaagaggacgaggccagaaatcaagatctgacacagagtgtgacatcagcgaccaggcctttactcaga cagatagaaaacttacagtcaacatatgctgcacaatctcagtcatgggagaaagtagagaaaaatctttctgataggct agttgatgcccaggctcaacttgccacggcggtagaaaaggaaagatcagcgacagaggctgtcatggagcttaggtcaa aggtcacaagtttggagactcaaatcagctgtttgaaacaagacaagacacaactcactgccgaattagacctactgaaa acaaaactagaggtgctagaggatgcaaaaaatagtgatattgcacagttagagactgctaagcaggaacttaccaaggg actggctgaaataaaaaaggaaaaggttttcctcgaaacacagcttgacatggagaaaacaaaagtagatcaggaaaaga aaaagtttgcattagctcaggatcagatctcacaactggagagggaggcccagcatcctatttctagaggatctcagtca ccgctatctatatcaaggacggaaagtgttagtggagagatgccctcaatgtttacatcattcacacaggatgatttaga gagaagttttattctgtcacctaatgcctcaaagaccagtttatacgagagcatgagacactctggtgcggcttctatac tagagaacctacagtcccaactcaaacagagggaaggggaaatagtccaactcaggaatgatatacagcagctagagaga accagggagtcgatggctcgtgagcttgttaatctgaccaatcaaaatgaagaactacagagtcaagtggaacaactacc acaatataaatccaagttagaggatgttgacagtcgctacaacgccttacttcagatgtacggtgaaaaagtggaggaag ccgaggaactacgcatggacttacaggacgtcaaggaaatgtataaggcacaggccaatttagccgtgattctgagaaag aagtga |
|
Protein
| Protein ID | pfu_aug2.0_4996.1_22633.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4996.1_22633.t1 QLQQVEEAREAELEDINKVTTEFTQRLSDSEKRVNQAIREKEAVKKQLQRAQEDLEKKIKDKSLQNLIKEKDQQIDELMQ EGEKLSKQQLQVNTIIKKLRVKEKENESLITSQKKKLEDQKSELDHLRKVCESKDDLEKKQTEAIGQLNAAVQRQEREMS KLKSDHDDAQERVRGLQTALDNSYKEIADLHRSNAAQDSKAHEAALSAEMQVREELKIQLDHERKAFVQEKEALVMQIED LRLTLSRMEKEHNRREDMLRQEISDLQRHLQEDEARNQDLTQSVTSATRPLLRQIENLQSTYAAQSQSWEKVEKNLSDRL VDAQAQLATAVEKERSATEAVMELRSKVTSLETQISCLKQDKTQLTAELDLLKTKLEVLEDAKNSDIAQLETAKQELTKG LAEIKKEKVFLETQLDMEKTKVDQEKKKFALAQDQISQLEREAQHPISRGSQSPLSISRTESVSGEMPSMFTSFTQDDLE RSFILSPNASKTSLYESMRHSGAASILENLQSQLKQREGEIVQLRNDIQQLERTRESMARELVNLTNQNEELQSQVEQLP QYKSKLEDVDSRYNALLQMYGEKVEEAEELRMDLQDVKEMYKAQANLAVILRKK |
|