Gene
| Gene Model ID | pfu_aug2.0_4999.1_32732 |
|---|---|
| Locus | scaffold4999.1 : 11706 ... 14325 : - |
| To GenomeBrowser | scaffold4999.1:11706..14325 |
| Genes list of scaffold | scaffold4999.1 |
| Synonym | pfu_aug1.0_9260.1_17456 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4999.1_32732.t1 | 3 | 1 | Sulfate_tra_GLY | 50 | 133 | 9.3e-23 | 79.7 | 2.5e-26 | 9.3e-23 | 79.7 |
| pfu_aug2.0_4999.1_32732.t1 | 1 | 1 | Sulfate_transp | 190 | 469 | 0.0 | 207.3 | 0.0 | 0.0 | 206.6 |
| pfu_aug2.0_4999.1_32732.t1 | 3 | 2 | Sulfate_tra_GLY | 408 | 425 | 9.3e-23 | 79.7 | 2.6 | 9700.0 | -3.7 |
| pfu_aug2.0_4999.1_32732.t1 | 3 | 3 | Sulfate_tra_GLY | 480 | 503 | 9.3e-23 | 79.7 | 0.15 | 560.0 | 0.2 |
| pfu_aug2.0_4999.1_32732.t1 | 1 | 1 | STAS | 533 | 770 | 2.7e-23 | 81.5 | 1.9e-26 | 7.0e-23 | 80.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_4999.1_32732.t1 | gi|558227072|ref|XP_006137601.1| | PREDICTED: prestin isoform X1 [Pelodiscus sinensis] | 0.0 |
| pfu_aug2.0_4999.1_32732.t1 | gi|676469207|ref|XP_009058457.1| | hypothetical protein LOTGIDRAFT_122677, partial [Lottia gigantea] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_4999.1_32732.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4999.1_32732.t1 atggcaaaatctactagtataggaggtctttcctttgtggacataccaaacgaaaaagaggacgacagcaaaaaaacaat agcacaacagattaaacagaactgttactgtacgcgtcgtcgactttggaaatttttgacgtatttcctgccgattgtga agtatgtaaaatactataaattccgtgacaacattcttgtagacacattggtgggagtaactatagggattttacatata ccccaagctttggcgtttggtttattggcttcgatcaagttggaaaatggattgtatacatctctgtggccaattttgct ttatgtcttatttggaacgtccccacacgtgtcgatgggaactagtgccgtcatttgcatggtcacagcaagcgtcgtcg atcgtcaagccgaaatatttaaagaaaattatgtgtataatgcaacaattactaaccagagcaaacttaatgatgaaata gactgggaatctattccagaatttatggactacaaggaaaatgttgcaatgaacatagcacttttctccggtttgatact tctcataatgggacttttgaagctgggattcataactgcttatctttccgagtcattcttcgcgggatttacatccgggg cagccgttcatatagcaaccagtcaaattccagccattctaggattaaagatccaaaggtacgggggagcgtttaaaata ctctatacatacaatgaaatactcagtcatataactgaggctaacttagcaacaattcttattggaattatgagtatgac aattgtctttattatcaaagatatcatcaacgaaaaattcaaagaaaaactttttataccgattcctggtgagttactcg tggtcatactggcgactcttatttcgttcttaggtcatttcgaagaaaatttctctgtcgatgtagttggacatattcca aatgacatgcctctcccggtagcaccaaaaataattgtttttgaaatgttctatgcagaatgttttgttattgccattct catatttgccaatactatagccatggcgaagatatgtgcgaagaaacacaattatgaaatagatgataatcaagaagtat ttgcatatggaatgtgtaattttatcggcgctttttttaaatgtctcccgtccgctgtagctccaccgcgctctatggtt gcctcttctatgaacgtaagaacaacattgaatggaatatttgccatgcttcttatgttacttgtgattttagtgttaag tatgctattttatccgcttcccaaatccgcactagcagccattatcgtcattgctttgaagggacttttcgttcagatac ttgtttttaagaaattctggaaaataaacaaatttgatttcatgatatggttgtccacaatcgtatctgtagtctttcta gacatcgactatgggttgtatattggggtctgtgtatcacttattaccgttatatggcaaagtcagcactccagagctac gccagtttgggtaacagaggaaatactagtcttggacaaatatggaaagccagagctgcgtaaaaagttcaacgatagcg gaattaaaatatttaagtttcagtccagtcttttctttgcaaatgctgaaatattcagacagaaactttataagagaact gtgaatccaagaaagataatgaaattattacggaagaagcaaacattaatgaagaagactccttcatcgcgacaggtttc ggaaatgtctacaaatcctacaggtggaaatacaaatgatgcgtattcaaaagacaatccagacgatataaagagagcaa tggaagagagtgttccacagatttctgtgattgaaagtgagcccacagctaatgtctctgatggcaaggataacacatca gacatttcatgtgagataggtgatatccacaaatatgactacttaaatataccaataaatctgcggaaccgcaaaataag tcaagcatctagcgtatttacagtaggtacggaggattccggctacgatgaagatgaagagtttgcgaatcctctggttc ggctgaaggaatttcagaaaacacggtttatcataatagactgttctccaatcaactacctcgatgtgtcaggtgccagt gtacttggtcacatccatacagaatatgaaaatgtcggtataaaggtgctgcttgcgggatgtgcgcgtgatgtagtcca atcgatggagtgtgcatcggtttttgataagataccacgacaaaatgtgtaccaaacaatgacggaggccgtccattcag cagagggtcaattaattaacagcaatggtagaaaacctattagtagagctgcaagttttacgtttgaggaagcagtagag gactcatacgcagccaatacttcgtga |
|
Protein
| Protein ID | pfu_aug2.0_4999.1_32732.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4999.1_32732.t1 MAKSTSIGGLSFVDIPNEKEDDSKKTIAQQIKQNCYCTRRRLWKFLTYFLPIVKYVKYYKFRDNILVDTLVGVTIGILHI PQALAFGLLASIKLENGLYTSLWPILLYVLFGTSPHVSMGTSAVICMVTASVVDRQAEIFKENYVYNATITNQSKLNDEI DWESIPEFMDYKENVAMNIALFSGLILLIMGLLKLGFITAYLSESFFAGFTSGAAVHIATSQIPAILGLKIQRYGGAFKI LYTYNEILSHITEANLATILIGIMSMTIVFIIKDIINEKFKEKLFIPIPGELLVVILATLISFLGHFEENFSVDVVGHIP NDMPLPVAPKIIVFEMFYAECFVIAILIFANTIAMAKICAKKHNYEIDDNQEVFAYGMCNFIGAFFKCLPSAVAPPRSMV ASSMNVRTTLNGIFAMLLMLLVILVLSMLFYPLPKSALAAIIVIALKGLFVQILVFKKFWKINKFDFMIWLSTIVSVVFL DIDYGLYIGVCVSLITVIWQSQHSRATPVWVTEEILVLDKYGKPELRKKFNDSGIKIFKFQSSLFFANAEIFRQKLYKRT VNPRKIMKLLRKKQTLMKKTPSSRQVSEMSTNPTGGNTNDAYSKDNPDDIKRAMEESVPQISVIESEPTANVSDGKDNTS DISCEIGDIHKYDYLNIPINLRNRKISQASSVFTVGTEDSGYDEDEEFANPLVRLKEFQKTRFIIIDCSPINYLDVSGAS VLGHIHTEYENVGIKVLLAGCARDVVQSMECASVFDKIPRQNVYQTMTEAVHSAEGQLINSNGRKPISRAASFTFEEAVE DSYAANTS |
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