Gene
| Gene Model ID | pfu_aug2.0_4999.1_32733 |
|---|---|
| Locus | scaffold4999.1 : 32656 ... 33600 : + |
| To GenomeBrowser | scaffold4999.1:32656..33600 |
| Genes list of scaffold | scaffold4999.1 |
| Synonym | pfu_aug1.0_11.1_50538 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4999.1_32733.t1 | 1 | 1 | SNF | 69 | 104 | 5.0e-18 | 64.8 | 3.9e-22 | 5.8e-18 | 64.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_4999.1_32733.t1 | gi|260814309|ref|XP_002601858.1| | solute carrier family 6, member 1 [Branchiostoma floridae] | 2.0e-18 |
| pfu_aug2.0_4999.1_32733.t1 | gi|617432908|ref|XP_007562442.1| | PREDICTED: sodium- and chloride-dependent GABA transporter 1-like [Poecilia formosa] | 2.0e-18 |
| pfu_aug2.0_4999.1_32733.t1 | gi|410899935|ref|XP_003963452.1| | PREDICTED: sodium- and chloride-dependent GABA transporter 1-like [Takifugu rubripes] | 5.0e-18 |
| pfu_aug2.0_4999.1_32733.t1 | gi|658859236|ref|XP_008412334.1| | PREDICTED: sodium- and chloride-dependent GABA transporter 1-like [Poecilia reticulata] | 2.0e-17 |
| pfu_aug2.0_4999.1_32733.t1 | gi|551508404|ref|XP_005805731.1| | PREDICTED: sodium- and chloride-dependent GABA transporter 1-like isoform X1 [Xiphophorus maculatus] | 2.0e-17 |
Transcript
| Transcript ID | pfu_aug2.0_4999.1_32733.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4999.1_32733.t1 atgcgtgacggctgcttcattggttcggtaatgatcagactttataccgattccgaagctgaagcagaccgcagtgaact gaatggatatccgatgaacgtaaatgattccaaaatggataacaaaagtaaagaacttatcaacggccaaacgaaggacg attttgacgtagaagtagacgtcagcttggacgatatagaatccagggatgtctggtcgggaaaactggattttatactg tcgtgtgttggatttgctgtgggattaggaaatatatggcgatttccttatctctgctacaaaaatggtggag |
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Protein
| Protein ID | pfu_aug2.0_4999.1_32733.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4999.1_32733.t1 MRDGCFIGSVMIRLYTDSEAEADRSELNGYPMNVNDSKMDNKSKELINGQTKDDFDVEVDVSLDDIESRDVWSGKLDFIL SCVGFAVGLGNIWRFPYLCYKNGG |
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