Gene
| Gene Model ID | pfu_aug2.0_5.1_16660 |
|---|---|
| Locus | scaffold5.1 : 2838 ... 16735 : - |
| To GenomeBrowser | scaffold5.1:2838..16735 |
| Genes list of scaffold | scaffold5.1 |
| Synonym | pfu_aug1.0_14979.1_25362 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_5.1_16660.t1 | 2 | 1 | zf-C3HC4 | 14 | 55 | 1.9e-08 | 33.7 | 1.6e-11 | 1.9e-08 | 33.7 |
| pfu_aug2.0_5.1_16660.t1 | 3 | 1 | zf-C3HC4_2 | 14 | 55 | 3.3e-08 | 33.4 | 2.7e-11 | 3.3e-08 | 33.4 |
| pfu_aug2.0_5.1_16660.t1 | 3 | 1 | zf-B_box | 29 | 38 | 7.5e-06 | 25.7 | 2.3 | 2900.0 | -1.8 |
| pfu_aug2.0_5.1_16660.t1 | 3 | 2 | zf-B_box | 50 | 96 | 7.5e-06 | 25.7 | 1.6e-06 | 0.0019 | 18.0 |
| pfu_aug2.0_5.1_16660.t1 | 2 | 2 | zf-C3HC4 | 52 | 87 | 1.9e-08 | 33.7 | 2.6 | 3200.0 | -2.2 |
| pfu_aug2.0_5.1_16660.t1 | 3 | 2 | zf-C3HC4_2 | 52 | 83 | 3.3e-08 | 33.4 | 7.1 | 8800.0 | -3.2 |
| pfu_aug2.0_5.1_16660.t1 | 3 | 3 | zf-B_box | 112 | 143 | 7.5e-06 | 25.7 | 2.3e-07 | 0.00028 | 20.7 |
| pfu_aug2.0_5.1_16660.t1 | 3 | 3 | zf-C3HC4_2 | 113 | 139 | 3.3e-08 | 33.4 | 1.4 | 1700.0 | -0.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_5.1_16660.t1 | gi|585690225|ref|XP_006821026.1| | PREDICTED: tripartite motif-containing protein 45-like [Saccoglossus kowalevskii] | 2.0e-15 |
Transcript
| Transcript ID | pfu_aug2.0_5.1_16660.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5.1_16660.t1 atggccacggcggcagacaagaaggaagatttgacaacttgttcaatttgttttgagacgtttaaaagaccaaaacattt tccgtgtttacatagtttttgtgaaggatgtatacaaacttatattacaaagacgaaatcaggtcagaaactttgtgcgg catgttcgagggaaaacgaaaccgaaagtgccttttcttggtgtgcaaattgtagtgaggcactttgtaagatatgtgat cgaagtcatcggagaaataaaacgtcgtcaaatcataaacttattgagttacgtgaggacttttccaaagatatcccctt gtatcatgctgacgtattctgtactgaacattcagaagagaaagtaaaagcgtattgtaacgatcactccatcgtttgct gtatgacatgcgtaatgttaaaacacagaaaatgtgacaatgttggatcaattgaagatgcagccgaagagaaaaagaaa tcaaaagaaataaaagaatttgctcaaaatctcaaggatttgaaaacatctctggagaaattatgcaaaaacaggacaga caatttaaagacattcgaaatcgatataaagaagataagaggcgatgtagaaactttattcaaacagacaaatatgacac atgcaccaccagcgcaattcatacaagcaatggagaaattagcacagcaaaaagaaatactagaaaactttgtcagagat caaagtcaaaatctcagagaagtaagagtaactttcaacgcaaacgagaagctactggaactgagtagagtgatacagga atatggagaagtgaaagtcagtagaacaactaccgatggacccaagcattctgttaccacaaaggtcaacatgctgacaa cagtgccaaacctattcgtatcagctgagacaggatattttagtacaggaatagctttattagagaatggacaagttgtg ctatcaaacagcagcagcaacaacaacaacaaaaacatcgaattacatgatactcagtgttccactatcctgtcatcgct atcattaccatcatggccatatggagtcaaaatgatcagtgacatagagggcgctgtagctgtatctggatatggattga tcctctttatgatacaaaacaatcagatagtgaaggttacagaaataaaaactaaaatcaattatgactttatgtatcat cggggtcaatattatatagggtgtaatttgaagaaaattgcaagatatgacaaacgtcttcgtaggttaagtgacattaa agtcaataataacgtcggctatatggctgtccgagacgacaactcactgtgttacacaagtgctgaatggagaggacgcg aattgtactgtataactatggacggtaccccagtgttcacgtactcacatgacaagctacattatacaaccggagttaca gtggatcatgccggctttatctatgtctgtggccggggctctaggaacatacatcagctgagtaatgacgggaagctaca gagaattatgtttgacaatctacctgctggtccttactgtatcagctttaatacacaaggtgacaaggctgtcatgggat gtgagggaaaagtactactatacgatctgaaataa |
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Protein
| Protein ID | pfu_aug2.0_5.1_16660.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5.1_16660.t1 MATAADKKEDLTTCSICFETFKRPKHFPCLHSFCEGCIQTYITKTKSGQKLCAACSRENETESAFSWCANCSEALCKICD RSHRRNKTSSNHKLIELREDFSKDIPLYHADVFCTEHSEEKVKAYCNDHSIVCCMTCVMLKHRKCDNVGSIEDAAEEKKK SKEIKEFAQNLKDLKTSLEKLCKNRTDNLKTFEIDIKKIRGDVETLFKQTNMTHAPPAQFIQAMEKLAQQKEILENFVRD QSQNLREVRVTFNANEKLLELSRVIQEYGEVKVSRTTTDGPKHSVTTKVNMLTTVPNLFVSAETGYFSTGIALLENGQVV LSNSSSNNNNKNIELHDTQCSTILSSLSLPSWPYGVKMISDIEGAVAVSGYGLILFMIQNNQIVKVTEIKTKINYDFMYH RGQYYIGCNLKKIARYDKRLRRLSDIKVNNNVGYMAVRDDNSLCYTSAEWRGRELYCITMDGTPVFTYSHDKLHYTTGVT VDHAGFIYVCGRGSRNIHQLSNDGKLQRIMFDNLPAGPYCISFNTQGDKAVMGCEGKVLLYDLK |
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