Gene
| Gene Model ID | pfu_aug2.0_5.1_16661 |
|---|---|
| Locus | scaffold5.1 : 16913 ... 23685 : - |
| To GenomeBrowser | scaffold5.1:16913..23685 |
| Genes list of scaffold | scaffold5.1 |
| Synonym | pfu_aug1.0_14979.1_25360 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_5.1_16661.t1 | 3 | 1 | zf-RING_2 | 13 | 59 | 1.4e-07 | 31.1 | 1.6e-10 | 1.4e-07 | 31.1 |
| pfu_aug2.0_5.1_16661.t1 | 2 | 1 | zf-C3HC4 | 14 | 58 | 1.9e-09 | 36.9 | 2.2e-12 | 1.9e-09 | 36.9 |
| pfu_aug2.0_5.1_16661.t1 | 4 | 1 | zf-C3HC4_2 | 14 | 58 | 2.9e-08 | 33.5 | 3.3e-11 | 2.9e-08 | 33.5 |
| pfu_aug2.0_5.1_16661.t1 | 3 | 1 | zf-C3HC4_4 | 14 | 58 | 5.4e-06 | 26.1 | 6.1e-09 | 5.4e-06 | 26.1 |
| pfu_aug2.0_5.1_16661.t1 | 3 | 1 | zf-B_box | 29 | 37 | 1.6e-06 | 27.8 | 7.5 | 6600.0 | -2.9 |
| pfu_aug2.0_5.1_16661.t1 | 3 | 2 | zf-B_box | 97 | 143 | 1.6e-06 | 27.8 | 8.7e-07 | 0.00076 | 19.3 |
| pfu_aug2.0_5.1_16661.t1 | 2 | 2 | zf-C3HC4 | 99 | 133 | 1.9e-09 | 36.9 | 0.26 | 230.0 | 1.5 |
| pfu_aug2.0_5.1_16661.t1 | 4 | 2 | zf-C3HC4_2 | 99 | 130 | 2.9e-08 | 33.5 | 1.3 | 1100.0 | -0.3 |
| pfu_aug2.0_5.1_16661.t1 | 3 | 2 | zf-RING_2 | 99 | 132 | 1.4e-07 | 31.1 | 0.81 | 710.0 | 0.1 |
| pfu_aug2.0_5.1_16661.t1 | 3 | 2 | zf-C3HC4_4 | 112 | 127 | 5.4e-06 | 26.1 | 2.1 | 1800.0 | -1.2 |
| pfu_aug2.0_5.1_16661.t1 | 3 | 3 | zf-B_box | 159 | 190 | 1.6e-06 | 27.8 | 1.5e-07 | 0.00013 | 21.7 |
| pfu_aug2.0_5.1_16661.t1 | 4 | 3 | zf-C3HC4_2 | 160 | 186 | 2.9e-08 | 33.5 | 1.2 | 1000.0 | -0.2 |
| pfu_aug2.0_5.1_16661.t1 | 3 | 3 | zf-RING_2 | 173 | 192 | 1.4e-07 | 31.1 | 5.4 | 4700.0 | -2.5 |
| pfu_aug2.0_5.1_16661.t1 | 3 | 3 | zf-C3HC4_4 | 179 | 186 | 5.4e-06 | 26.1 | 4.3 | 3700.0 | -2.2 |
| pfu_aug2.0_5.1_16661.t1 | 4 | 4 | zf-C3HC4_2 | 572 | 583 | 2.9e-08 | 33.5 | 8.1 | 7100.0 | -2.9 |
Transcript
| Transcript ID | pfu_aug2.0_5.1_16661.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5.1_16661.t1 atggccacggcggtagacaagaaggaagatttgacaacttgttcaatttgttttgagacgtttaaaaaaccaaaacattt tccttgtttacatactttttgtgaaggatgtatacaaacttatataacaaagacttttgagcaagctaggggcggggtga attgtcctctatgtcggatgttcatatcaaaacctggtgatatcaaagttgaggaatggtcgacaaaactacctacaaat catatattggtgagtcttattgatttgaatgaaacgaaatcgggtcagaaactttgcgcggcatgttcaagggaaaacga aaccgaaagtgccttttcgtggtgtgcaaattgtagtgaggccctttgtaaggcatgtgaccgaagtcatcggaggaata aagcgtcgtcaaatcacaaacttattgacttaagtgaggacttttccaaagatattcccttgtaccatgctgacgtattc tgtactgaacatccagaaaagaaagtagaagcgtattgcaacgaccactctaccgtttgctgtatgacatgcgtaatgtt aaaacacagaaaatgtgacaatgttgggtcgattgaagatgtggccgaagagaaaaagaaatcaaaggaaatacaagaat tttcacaaaacctccaaaatctgaaagcgtctttggagaaattgtgcaaaaacaggacagaaagcttgaagacatttgaa aacgatataaaaaagatgagagctgacgttgaaactttattcaagcagctttccgaccatttaaacaaactaaaaacaaa cattacgtccgagatatgtaaggttgaaaaagtaatcaaaacagaggtagagagtgagcattttgaaatgaagtgcagaa ttcccgcagtagaaaacgacctgtccttatttgagaccaacatgaagcacgccccaccagcgcaattcataaaagcaatg gaaaatttagagaagcaaaaagaaatactagaaaactttgtgagagatcaaagtcaaaatctcagagaaataaaagttac tttcaaagcgaacgaaaaactactggaactgagtagagtgatacaggaatgtggagaagtgaaagtcagtagagcaaact atgtaccccagcattctgttatcacaaaggtcaacatgctgacagcagtacccactcttacctcaaaagttaaaacaggc ttcggtgtgagaggaatatctttattagataatggaaaagtagtactttcaaatggcaacaacaacaggatagagttgtg ggatcctcgatgttccatagtactgtcatctttagcattacaaggagattcttggggaatcaagatgaccagtgataatg agggagctgtagttgttaaaggatacggattggtcctattcaaaatacaaaacaataagatagtaaagataagagaaatg aagacagacgtgaatgcagactttgtatatcatcatggtctatactatgtagggtgcgataacaaaataactgtttatga ttgcaactatcgtaaagttagagacatatcagtgaacaccagagtgagttatatgtgtttacgtggtgacaacgcgcttt gttatacagcattcgatcaattttcttatgaaaaatctttgtactgtattcttatggatggttcctcggtgttcacatac tcacatgacgaactttacgatgcttcaggtgtcactgtggatcattccggtcatatatatgtttgtgataactttcacag aagtaagaacgtgcatcagctgagttatgacgggaagctacagaggattatatttgacaatctacctgctaaaccttact gtatcagctttaatcctcgaggtgacaaggctgtattcggatgttatggcacagttctcatgtaccatatgaaataa |
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Protein
| Protein ID | pfu_aug2.0_5.1_16661.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5.1_16661.t1 MATAVDKKEDLTTCSICFETFKKPKHFPCLHTFCEGCIQTYITKTFEQARGGVNCPLCRMFISKPGDIKVEEWSTKLPTN HILVSLIDLNETKSGQKLCAACSRENETESAFSWCANCSEALCKACDRSHRRNKASSNHKLIDLSEDFSKDIPLYHADVF CTEHPEKKVEAYCNDHSTVCCMTCVMLKHRKCDNVGSIEDVAEEKKKSKEIQEFSQNLQNLKASLEKLCKNRTESLKTFE NDIKKMRADVETLFKQLSDHLNKLKTNITSEICKVEKVIKTEVESEHFEMKCRIPAVENDLSLFETNMKHAPPAQFIKAM ENLEKQKEILENFVRDQSQNLREIKVTFKANEKLLELSRVIQECGEVKVSRANYVPQHSVITKVNMLTAVPTLTSKVKTG FGVRGISLLDNGKVVLSNGNNNRIELWDPRCSIVLSSLALQGDSWGIKMTSDNEGAVVVKGYGLVLFKIQNNKIVKIREM KTDVNADFVYHHGLYYVGCDNKITVYDCNYRKVRDISVNTRVSYMCLRGDNALCYTAFDQFSYEKSLYCILMDGSSVFTY SHDELYDASGVTVDHSGHIYVCDNFHRSKNVHQLSYDGKLQRIIFDNLPAKPYCISFNPRGDKAVFGCYGTVLMYHMK |
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