Gene
| Gene Model ID | pfu_aug2.0_5.1_16662 |
|---|---|
| Locus | scaffold5.1 : 42951 ... 113765 : - |
| To GenomeBrowser | scaffold5.1:42951..113765 |
| Genes list of scaffold | scaffold5.1 |
| Synonym | pfu_aug1.0_3957.1_23445 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| protein alan shepard-like | GO:0003676 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_5.1_16662.t3 | 2 | 1 | RRM_1 | 56 | 76 | 1.2e-13 | 50.4 | 0.00025 | 0.93 | 9.1 |
| pfu_aug2.0_5.1_16662.t3 | 2 | 1 | RRM_6 | 56 | 81 | 7.7e-10 | 38.6 | 0.00086 | 3.2 | 7.8 |
| pfu_aug2.0_5.1_16662.t3 | 2 | 2 | RRM_1 | 114 | 177 | 1.2e-13 | 50.4 | 1.5e-13 | 5.4e-10 | 38.7 |
| pfu_aug2.0_5.1_16662.t3 | 2 | 2 | RRM_6 | 114 | 175 | 7.7e-10 | 38.6 | 3.1e-10 | 1.1e-06 | 28.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_5.1_16662.t3 | gi|551507734|ref|XP_005805396.1| | PREDICTED: RNA-binding motif, single-stranded-interacting protein 1-like [Xiphophorus maculatus] | 1.0e-38 |
| pfu_aug2.0_5.1_16662.t3 | gi|512848323|ref|XP_004915435.1| | PREDICTED: RNA-binding motif, single-stranded-interacting protein 3 isoform X4 [Xenopus (Silurana) tropicalis] | 1.0e-38 |
Transcript
| Transcript ID | pfu_aug2.0_5.1_16662.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5.1_16662.t1 atggtggatatgctattaatggactatcagctagtacaactgccgtccgtcacaccaagtttgacgtacacaccacgcag catgcctgcggccagtcccaatacgacgagtagtcagtccagtaaccagagtcaatccggggatcaacttagcagaacta atttatatatacgagggcttaatcctaacacaacagataaagatttagtcaatttatgccaacccagactcattttattt ggcgagtgttcgaatagttacataattcaagatgctcaaatgttgcaccaagttacgtctgacaaacacatgcaacagga acaggaccctacaaatctatatatagccaatctgcctatttattttgctgagaccaatttagagaatatgttcaaagaat atggaactgtgatttcaacccgaattttacggaaacctgacggaattagccgaggtgtcggtttcagccgaatggaatca aaagaaaaatgcgagcaaattatcaacgctttcaacggaaaaattttaccagaggttcttccaggattggaaaagagtgg atccctacaagcgtatttccaacaaatgggagatgccagtctggcattggcagcctatgcagattccgcgtcagctctag ctgctcaaagtggggcggtgaccccccagctgcttgccacacctactataatgccccgatcctacgccgtggccacgccc caaacataccaagtggcagcccagtcaaccaatcccgccgcctgggtacatccgggatacaccctcgttcaaccccctat ggctcacgtaagcccttactcttactttacagggcaatccggaatcgtcgatccctccaattag |
|
| Transcript ID | pfu_aug2.0_5.1_16662.t2 |
| Definition | - |
>pfu_aug2.0_5.1_16662.t2 atgttagagcttcaaacgtacacaccacgcagcatgcctgcggccagtcccaatacgacgagtagtcagtccagtaacca gagtcaatccggggatcaacttagcagaactaatttatatatacgagggcttaatcctaacacaacagataaagatttag tcaatttatgccaacccagactcattttatttggcgagtgttcgaatagttacataattcaagatgctcaaatgttgcac caagttacgtctgacaaacacatgcaacaggaacaggaccctacaaatctatatatagccaatctgcctatttattttgc tgagaccaatttagagaatatgttcaaagaatatggaactgtgatttcaacccgaattttacggaaacctgacggaatta gccgaggtgtcggtttcagccgaatggaatcaaaagaaaaatgcgagcaaattatcaacgctttcaacggaaaaatttta ccagaggttcttccaggattggaaaagagtggatccctacaagcgtatttccaacaaatgggagatgccagtctggcatt ggcagcctatgcagattccgcgtcagctctagctgctcaaagtggggcggtgaccccccagctgcttgccacacctacta taatgccccgatcctacgccgtggccacgccccaaacataccaagtggcagcccagtcaaccaatcccgccgcctgggta catccgggatacaccctcgttcaaccccctatggctcacgtaagcccttactcttactttacagggcaatccggaatcgt cgatccctccaattag |
|
| Transcript ID | pfu_aug2.0_5.1_16662.t3 |
| Definition | - |
>pfu_aug2.0_5.1_16662.t3 atgcagtttttgttgacgaccccaccccctgaggattttacgtttgacaccctccttgaagcacagacgtacacaccacg cagcatgcctgcggccagtcccaatacgacgagtagtcagtccagtaaccagagtcaatccggggatcaacttagcagaa ctaatttatatatacgagggcttaatcctaacacaacagataaagatttagtcaatttatgccaacccagactcatttta tttggcgagtgttcgaatagttacataattcaagatgctcaaatgttgcaccaagttacgtctgacaaacacatgcaaca ggaacaggaccctacaaatctatatatagccaatctgcctatttattttgctgagaccaatttagagaatatgttcaaag aatatggaactgtgatttcaacccgaattttacggaaacctgacggaattagccgaggtgtcggtttcagccgaatggaa tcaaaagaaaaatgcgagcaaattatcaacgctttcaacggaaaaattttaccagaggttcttccaggattggaaaagag tggatccctacaagcgtatttccaacaaatgggagatgccagtctggcattggcagcctatgcagattccgcgtcagctc tagctgctcaaagtggggcggtgaccccccagctgcttgccacacctactataatgccccgatcctacgccgtggccacg ccccaaacataccaagtggcagcccagtcaaccaatcccgccgcctgggtacatccgggatacaccctcgttcaaccccc tatggctcacgtaagcccttactcttactttacagggcaatccggaatcgtcgatccctccaattag |
|
Protein
| Protein ID | pfu_aug2.0_5.1_16662.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5.1_16662.t1 MVDMLLMDYQLVQLPSVTPSLTYTPRSMPAASPNTTSSQSSNQSQSGDQLSRTNLYIRGLNPNTTDKDLVNLCQPRLILF GECSNSYIIQDAQMLHQVTSDKHMQQEQDPTNLYIANLPIYFAETNLENMFKEYGTVISTRILRKPDGISRGVGFSRMES KEKCEQIINAFNGKILPEVLPGLEKSGSLQAYFQQMGDASLALAAYADSASALAAQSGAVTPQLLATPTIMPRSYAVATP QTYQVAAQSTNPAAWVHPGYTLVQPPMAHVSPYSYFTGQSGIVDPSN |
|
| Protein ID | pfu_aug2.0_5.1_16662.t2 |
| Definition | - |
>pfu_aug2.0_5.1_16662.t2 MLELQTYTPRSMPAASPNTTSSQSSNQSQSGDQLSRTNLYIRGLNPNTTDKDLVNLCQPRLILFGECSNSYIIQDAQMLH QVTSDKHMQQEQDPTNLYIANLPIYFAETNLENMFKEYGTVISTRILRKPDGISRGVGFSRMESKEKCEQIINAFNGKIL PEVLPGLEKSGSLQAYFQQMGDASLALAAYADSASALAAQSGAVTPQLLATPTIMPRSYAVATPQTYQVAAQSTNPAAWV HPGYTLVQPPMAHVSPYSYFTGQSGIVDPSN |
|
| Protein ID | pfu_aug2.0_5.1_16662.t3 |
| Definition | - |
>pfu_aug2.0_5.1_16662.t3 MQFLLTTPPPEDFTFDTLLEAQTYTPRSMPAASPNTTSSQSSNQSQSGDQLSRTNLYIRGLNPNTTDKDLVNLCQPRLIL FGECSNSYIIQDAQMLHQVTSDKHMQQEQDPTNLYIANLPIYFAETNLENMFKEYGTVISTRILRKPDGISRGVGFSRME SKEKCEQIINAFNGKILPEVLPGLEKSGSLQAYFQQMGDASLALAAYADSASALAAQSGAVTPQLLATPTIMPRSYAVAT PQTYQVAAQSTNPAAWVHPGYTLVQPPMAHVSPYSYFTGQSGIVDPSN |
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