Gene
Gene Model ID | pfu_aug2.0_5.1_16670 |
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Locus | scaffold5.1 : 244080 ... 248961 : - |
To GenomeBrowser | scaffold5.1:244080..248961 |
Genes list of scaffold | scaffold5.1 |
Synonym | pfu_aug1.0_4732.1_16487 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_5.1_16670.t1 | 2 | 1 | RVT_1 | 348 | 511 | 2.2e-15 | 56.5 | 2.9e-18 | 2.1e-14 | 53.3 |
pfu_aug2.0_5.1_16670.t1 | 2 | 2 | RVT_1 | 556 | 600 | 2.2e-15 | 56.5 | 0.047 | 350.0 | 0.4 |
pfu_aug2.0_5.1_16670.t1 | 1 | 1 | rve | 876 | 981 | 6.1e-17 | 61.8 | 1.8e-20 | 1.4e-16 | 60.7 |
Transcript
Transcript ID | pfu_aug2.0_5.1_16670.t1 |
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Definition | - |
>pfu_aug2.0_5.1_16670.t1 atggctcaacaaggagaagggcaagctgctgatcttgtagctccgagtccacagttaattaaccccaatttgaggttacc gcctgaattaaatcttacctctgatgtactgtctaaaatcgaagagtattgtaaccccaggaagaatgaggtatctgaat cacacagattctggactgtgaaatattttgaacccttcgataattttcttactgagctgcgtacgaaagcgtcatcgtgt aactttggaaatcttgaagatcgcatgatcagggataaaatcgtatttagcacaaccggcaaaatgcaacagttgctatt gcgtgatgatgaccttgacctaaggaaggcagtaagaatttgtcagtcctatgaacaggcaaataaacaagctcaggaaa tgcgtcatgatgaaactaaaaaggtcagtcgtgtgaagaaggacgacagttattcagactcgagtgacgacactgttgat tattggatgacaccggtaaaatatggctcgaagaaaaacataaaagcacacatgattgtaaacaatacggatgttcattt ccaacttgactgtggtgccgaaattaacaccatatgtatgaaatatgtaaaaaaggaacaagttcgacctacatcagccg ttctgcgcatgtacaacaacactaaactgggtccactaggagaaacagatcttaaagtcaccaatccgaaaaacaaagaa actttcatgttgaaatttattgttgtaagcaacaaactccaaagcttgctaggtatagaagctatacaagccatggatct cgtcaccatcaacaacgacaaatttgttgcaaatctgtctgaatcctgtgaacgtttaggtgatttgggagaagcatcct tgactatcgaccctgaatgtaaacctaaagcattaccgtgtaggaaaattccgcatgcacttaaagacaaggtcaaagtt gaaattgacacccttgtgaagcgtggtatcttggttccagttactaaaccaacaaaatgggtcagccagatggctatcgt acacaaatcaaatgggaaacttagaatttgtattgacccacaagcactcaactcagcattacaacgagagcactataatc ttcccgtattcgatgacatattgccgaaactgcaaaatgctaagattttcagtaaattagacattaaggaggctttttgg catgttcgattggacgaaccgtccagtgaacttactactatgatcactccgtttggaaggtatcgatgggcacgcttacc gtttggtctgaaagtatcaagcgaaatatttcagcgtaaactaaacgaagcacttcaagatctagaaggtacatttcctt tagttgatgacataatcattgcaggctgtggtgacaatgaggaaatcgcgaaacaagacaatgcagcaaaacttaatcag ttgcgtagccgctgcaaagagcaaaatatcgtacttaatgaagcaaaacaggaaatcgcacttgatgaaatatctttcta tggtcataagatcactagtgatggcatcaaaccaagtaccgacaaagttaaggcgatagtaaatatgcctagtccgaccg acatagcaggagtgaaacgattttgcggtatggtacagtacatgtctcgttttctaccaagtctgtcaactacacttgag ccgttgcgcatacttacccgcaaaaatcagccgtggcaatggactgccgagtgcgaacaagcgttcaataacgtgaaaat gcaactcacagatgctcccgtattagcatattttaatccagatgctaatcttgtattacaaacggatagcagtaaagatg gcctcggtgcagttttgttacagaacggaaaaccgattgaatatgcgtctcgttcacttaccaactcacagaagaaatgg gcacaaatagagaaggaagctctatccgtactatttggtctcaaacgttttgaccagtatacttttggtcgtaaagtggt agttgttaatgaccataaaccactggaaactatcttaaagaagccgctttcttcagctccgcgtcgacttcaagacatta tgatggaactacatcgatatgacatcgaatttcagtatctgaaaggtgagaaactcgttatcgccgatacacttagtcga gcattcctacaagaggatcaggacgatcgaccaaggatatttatgtctaccgtcaacgaagacatttcagacgagcgctt ggacgaaattcgagaagctactcgaaacgatttctcgatgagaaaactcattaataccattgagaatggatggcccgaca acaaatcagatgtaccaattgcttgtgcaccatactttaatgcacgtgacctactaagtatccatgatggcctagttgtt cgtggtgaggcaatcgttatacctcagtctctacgatctgacataaaagcgcgtctacactcctcgcatttaggatacga ctccatggtacgtcgagctagaggaaccgttttctggcctaatatcaattcagatattcgccaaattgctgacaattgcg tagcatgtcaggaacttaaaccgaaaccaacgaaaactccactgatgcagcacgacgatggacaatcaccgtggaacaaa attggtctggatcttttcgagattaaagggcggaattatcttgttagtattgattactacactaacttcatagaagttga ttatctatggaaaactacttcagcagaagtgatacgagtgctaaagaagcaattcgctagatttggtataccgtcgaaaa tcatttcggatggaggtccgcaatttacgtcttctgaatttgcgagatttacccgcaactggaaaattaaacaccgtact tcttcacctaatcaccaacgtgctaatggtaaagcggaatcagcagttaaggtgataaaacatcttattttaaaatgcga acatgatagaaccgatcagaacgaagctttgatggagcaacgcaatacaccacgtcaggatacaggacttagtcccgcac agatgatgttcggacgatcaactcgtacgttattaccgaccgtttgtcgtgaaaagcaggaaccgattaaaaagcgtgaa cggagaaggaaatctgtcaaaaattactatgacaaaacgtcaaccgatcacccggaactcaaaatcaatcaaaacatata cttcgaacataaggaagttagaaaaccggaacccgttcagcaaaagattactccgtctgagttaccgaaatccaaatcgt tgtcggaaccgaaaattgttccagctgaagaaccgagaagtcttacatcatctccaagcttatatgtgaatttaccgcca acattggaaaatccaaattctgtaccgttgcgtagatcaacccgtattcgcaaggaacccgcaaagttcaaggatttcgt tcggaagtga |
Protein
Protein ID | pfu_aug2.0_5.1_16670.t1 |
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Definition | - |
>pfu_aug2.0_5.1_16670.t1 MAQQGEGQAADLVAPSPQLINPNLRLPPELNLTSDVLSKIEEYCNPRKNEVSESHRFWTVKYFEPFDNFLTELRTKASSC NFGNLEDRMIRDKIVFSTTGKMQQLLLRDDDLDLRKAVRICQSYEQANKQAQEMRHDETKKVSRVKKDDSYSDSSDDTVD YWMTPVKYGSKKNIKAHMIVNNTDVHFQLDCGAEINTICMKYVKKEQVRPTSAVLRMYNNTKLGPLGETDLKVTNPKNKE TFMLKFIVVSNKLQSLLGIEAIQAMDLVTINNDKFVANLSESCERLGDLGEASLTIDPECKPKALPCRKIPHALKDKVKV EIDTLVKRGILVPVTKPTKWVSQMAIVHKSNGKLRICIDPQALNSALQREHYNLPVFDDILPKLQNAKIFSKLDIKEAFW HVRLDEPSSELTTMITPFGRYRWARLPFGLKVSSEIFQRKLNEALQDLEGTFPLVDDIIIAGCGDNEEIAKQDNAAKLNQ LRSRCKEQNIVLNEAKQEIALDEISFYGHKITSDGIKPSTDKVKAIVNMPSPTDIAGVKRFCGMVQYMSRFLPSLSTTLE PLRILTRKNQPWQWTAECEQAFNNVKMQLTDAPVLAYFNPDANLVLQTDSSKDGLGAVLLQNGKPIEYASRSLTNSQKKW AQIEKEALSVLFGLKRFDQYTFGRKVVVVNDHKPLETILKKPLSSAPRRLQDIMMELHRYDIEFQYLKGEKLVIADTLSR AFLQEDQDDRPRIFMSTVNEDISDERLDEIREATRNDFSMRKLINTIENGWPDNKSDVPIACAPYFNARDLLSIHDGLVV RGEAIVIPQSLRSDIKARLHSSHLGYDSMVRRARGTVFWPNINSDIRQIADNCVACQELKPKPTKTPLMQHDDGQSPWNK IGLDLFEIKGRNYLVSIDYYTNFIEVDYLWKTTSAEVIRVLKKQFARFGIPSKIISDGGPQFTSSEFARFTRNWKIKHRT SSPNHQRANGKAESAVKVIKHLILKCEHDRTDQNEALMEQRNTPRQDTGLSPAQMMFGRSTRTLLPTVCREKQEPIKKRE RRRKSVKNYYDKTSTDHPELKINQNIYFEHKEVRKPEPVQQKITPSELPKSKSLSEPKIVPAEEPRSLTSSPSLYVNLPP TLENPNSVPLRRSTRIRKEPAKFKDFVRK |