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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_5.1_16670
Locus scaffold5.1 : 244080 ... 248961 : -
To GenomeBrowser scaffold5.1:244080..248961
Genes list of scaffold scaffold5.1
Synonym pfu_aug1.0_4732.1_16487

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_5.1_16670.t1 2 1 RVT_1 348 511 2.2e-15 56.5 2.9e-18 2.1e-14 53.3
pfu_aug2.0_5.1_16670.t1 2 2 RVT_1 556 600 2.2e-15 56.5 0.047 350.0 0.4
pfu_aug2.0_5.1_16670.t1 1 1 rve 876 981 6.1e-17 61.8 1.8e-20 1.4e-16 60.7

Transcript
Transcript IDpfu_aug2.0_5.1_16670.t1
Definition-
>pfu_aug2.0_5.1_16670.t1
atggctcaacaaggagaagggcaagctgctgatcttgtagctccgagtccacagttaattaaccccaatttgaggttacc
gcctgaattaaatcttacctctgatgtactgtctaaaatcgaagagtattgtaaccccaggaagaatgaggtatctgaat
cacacagattctggactgtgaaatattttgaacccttcgataattttcttactgagctgcgtacgaaagcgtcatcgtgt
aactttggaaatcttgaagatcgcatgatcagggataaaatcgtatttagcacaaccggcaaaatgcaacagttgctatt
gcgtgatgatgaccttgacctaaggaaggcagtaagaatttgtcagtcctatgaacaggcaaataaacaagctcaggaaa
tgcgtcatgatgaaactaaaaaggtcagtcgtgtgaagaaggacgacagttattcagactcgagtgacgacactgttgat
tattggatgacaccggtaaaatatggctcgaagaaaaacataaaagcacacatgattgtaaacaatacggatgttcattt
ccaacttgactgtggtgccgaaattaacaccatatgtatgaaatatgtaaaaaaggaacaagttcgacctacatcagccg
ttctgcgcatgtacaacaacactaaactgggtccactaggagaaacagatcttaaagtcaccaatccgaaaaacaaagaa
actttcatgttgaaatttattgttgtaagcaacaaactccaaagcttgctaggtatagaagctatacaagccatggatct
cgtcaccatcaacaacgacaaatttgttgcaaatctgtctgaatcctgtgaacgtttaggtgatttgggagaagcatcct
tgactatcgaccctgaatgtaaacctaaagcattaccgtgtaggaaaattccgcatgcacttaaagacaaggtcaaagtt
gaaattgacacccttgtgaagcgtggtatcttggttccagttactaaaccaacaaaatgggtcagccagatggctatcgt
acacaaatcaaatgggaaacttagaatttgtattgacccacaagcactcaactcagcattacaacgagagcactataatc
ttcccgtattcgatgacatattgccgaaactgcaaaatgctaagattttcagtaaattagacattaaggaggctttttgg
catgttcgattggacgaaccgtccagtgaacttactactatgatcactccgtttggaaggtatcgatgggcacgcttacc
gtttggtctgaaagtatcaagcgaaatatttcagcgtaaactaaacgaagcacttcaagatctagaaggtacatttcctt
tagttgatgacataatcattgcaggctgtggtgacaatgaggaaatcgcgaaacaagacaatgcagcaaaacttaatcag
ttgcgtagccgctgcaaagagcaaaatatcgtacttaatgaagcaaaacaggaaatcgcacttgatgaaatatctttcta
tggtcataagatcactagtgatggcatcaaaccaagtaccgacaaagttaaggcgatagtaaatatgcctagtccgaccg
acatagcaggagtgaaacgattttgcggtatggtacagtacatgtctcgttttctaccaagtctgtcaactacacttgag
ccgttgcgcatacttacccgcaaaaatcagccgtggcaatggactgccgagtgcgaacaagcgttcaataacgtgaaaat
gcaactcacagatgctcccgtattagcatattttaatccagatgctaatcttgtattacaaacggatagcagtaaagatg
gcctcggtgcagttttgttacagaacggaaaaccgattgaatatgcgtctcgttcacttaccaactcacagaagaaatgg
gcacaaatagagaaggaagctctatccgtactatttggtctcaaacgttttgaccagtatacttttggtcgtaaagtggt
agttgttaatgaccataaaccactggaaactatcttaaagaagccgctttcttcagctccgcgtcgacttcaagacatta
tgatggaactacatcgatatgacatcgaatttcagtatctgaaaggtgagaaactcgttatcgccgatacacttagtcga
gcattcctacaagaggatcaggacgatcgaccaaggatatttatgtctaccgtcaacgaagacatttcagacgagcgctt
ggacgaaattcgagaagctactcgaaacgatttctcgatgagaaaactcattaataccattgagaatggatggcccgaca
acaaatcagatgtaccaattgcttgtgcaccatactttaatgcacgtgacctactaagtatccatgatggcctagttgtt
cgtggtgaggcaatcgttatacctcagtctctacgatctgacataaaagcgcgtctacactcctcgcatttaggatacga
ctccatggtacgtcgagctagaggaaccgttttctggcctaatatcaattcagatattcgccaaattgctgacaattgcg
tagcatgtcaggaacttaaaccgaaaccaacgaaaactccactgatgcagcacgacgatggacaatcaccgtggaacaaa
attggtctggatcttttcgagattaaagggcggaattatcttgttagtattgattactacactaacttcatagaagttga
ttatctatggaaaactacttcagcagaagtgatacgagtgctaaagaagcaattcgctagatttggtataccgtcgaaaa
tcatttcggatggaggtccgcaatttacgtcttctgaatttgcgagatttacccgcaactggaaaattaaacaccgtact
tcttcacctaatcaccaacgtgctaatggtaaagcggaatcagcagttaaggtgataaaacatcttattttaaaatgcga
acatgatagaaccgatcagaacgaagctttgatggagcaacgcaatacaccacgtcaggatacaggacttagtcccgcac
agatgatgttcggacgatcaactcgtacgttattaccgaccgtttgtcgtgaaaagcaggaaccgattaaaaagcgtgaa
cggagaaggaaatctgtcaaaaattactatgacaaaacgtcaaccgatcacccggaactcaaaatcaatcaaaacatata
cttcgaacataaggaagttagaaaaccggaacccgttcagcaaaagattactccgtctgagttaccgaaatccaaatcgt
tgtcggaaccgaaaattgttccagctgaagaaccgagaagtcttacatcatctccaagcttatatgtgaatttaccgcca
acattggaaaatccaaattctgtaccgttgcgtagatcaacccgtattcgcaaggaacccgcaaagttcaaggatttcgt
tcggaagtga

Protein
Protein IDpfu_aug2.0_5.1_16670.t1
Definition-
>pfu_aug2.0_5.1_16670.t1
MAQQGEGQAADLVAPSPQLINPNLRLPPELNLTSDVLSKIEEYCNPRKNEVSESHRFWTVKYFEPFDNFLTELRTKASSC
NFGNLEDRMIRDKIVFSTTGKMQQLLLRDDDLDLRKAVRICQSYEQANKQAQEMRHDETKKVSRVKKDDSYSDSSDDTVD
YWMTPVKYGSKKNIKAHMIVNNTDVHFQLDCGAEINTICMKYVKKEQVRPTSAVLRMYNNTKLGPLGETDLKVTNPKNKE
TFMLKFIVVSNKLQSLLGIEAIQAMDLVTINNDKFVANLSESCERLGDLGEASLTIDPECKPKALPCRKIPHALKDKVKV
EIDTLVKRGILVPVTKPTKWVSQMAIVHKSNGKLRICIDPQALNSALQREHYNLPVFDDILPKLQNAKIFSKLDIKEAFW
HVRLDEPSSELTTMITPFGRYRWARLPFGLKVSSEIFQRKLNEALQDLEGTFPLVDDIIIAGCGDNEEIAKQDNAAKLNQ
LRSRCKEQNIVLNEAKQEIALDEISFYGHKITSDGIKPSTDKVKAIVNMPSPTDIAGVKRFCGMVQYMSRFLPSLSTTLE
PLRILTRKNQPWQWTAECEQAFNNVKMQLTDAPVLAYFNPDANLVLQTDSSKDGLGAVLLQNGKPIEYASRSLTNSQKKW
AQIEKEALSVLFGLKRFDQYTFGRKVVVVNDHKPLETILKKPLSSAPRRLQDIMMELHRYDIEFQYLKGEKLVIADTLSR
AFLQEDQDDRPRIFMSTVNEDISDERLDEIREATRNDFSMRKLINTIENGWPDNKSDVPIACAPYFNARDLLSIHDGLVV
RGEAIVIPQSLRSDIKARLHSSHLGYDSMVRRARGTVFWPNINSDIRQIADNCVACQELKPKPTKTPLMQHDDGQSPWNK
IGLDLFEIKGRNYLVSIDYYTNFIEVDYLWKTTSAEVIRVLKKQFARFGIPSKIISDGGPQFTSSEFARFTRNWKIKHRT
SSPNHQRANGKAESAVKVIKHLILKCEHDRTDQNEALMEQRNTPRQDTGLSPAQMMFGRSTRTLLPTVCREKQEPIKKRE
RRRKSVKNYYDKTSTDHPELKINQNIYFEHKEVRKPEPVQQKITPSELPKSKSLSEPKIVPAEEPRSLTSSPSLYVNLPP
TLENPNSVPLRRSTRIRKEPAKFKDFVRK

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