Gene
| Gene Model ID | pfu_aug2.0_5.1_16674 |
|---|---|
| Locus | scaffold5.1 : 311572 ... 326566 : + |
| To GenomeBrowser | scaffold5.1:311572..326566 |
| Genes list of scaffold | scaffold5.1 |
| Synonym | pfu_aug1.0_1891.1_15650 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_5.1_16674.t1 | 1 | 1 | SH3_2 | 2 | 54 | 5.5e-11 | 41.7 | 4.9e-14 | 1.2e-10 | 40.6 |
| pfu_aug2.0_5.1_16674.t1 | 2 | 1 | SH3_1 | 3 | 48 | 1.6e-10 | 40.1 | 7.2e-13 | 1.8e-09 | 36.8 |
| pfu_aug2.0_5.1_16674.t1 | 2 | 1 | SH3_9 | 4 | 52 | 3.0e-10 | 39.5 | 2.2e-13 | 5.3e-10 | 38.7 |
| pfu_aug2.0_5.1_16674.t1 | 2 | 2 | SH3_1 | 200 | 217 | 1.6e-10 | 40.1 | 0.18 | 440.0 | 0.3 |
| pfu_aug2.0_5.1_16674.t1 | 2 | 2 | SH3_9 | 210 | 218 | 3.0e-10 | 39.5 | 3.4 | 8400.0 | -3.6 |
| pfu_aug2.0_5.1_16674.t1 | 1 | 1 | DUF2013 | 508 | 595 | 1.0e-20 | 73.9 | 8.3e-24 | 2.0e-20 | 72.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_5.1_16674.t1 | gi|676430535|ref|XP_009045958.1| | hypothetical protein LOTGIDRAFT_137389 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_5.1_16674.t1 | gi|671023079|ref|XP_008702352.1| | PREDICTED: LOW QUALITY PROTEIN: NCK-interacting protein with SH3 domain, partial [Ursus maritimus] | 0.0 |
| pfu_aug2.0_5.1_16674.t1 | gi|658850806|ref|XP_008407971.1| | PREDICTED: NCK-interacting protein with SH3 domain [Poecilia reticulata] | 0.0 |
| pfu_aug2.0_5.1_16674.t1 | gi|449473942|ref|XP_002193895.2| | 0.0 | |
| pfu_aug2.0_5.1_16674.t1 | gi|669276428|ref|XP_008630449.1| | PREDICTED: NCK-interacting protein with SH3 domain [Corvus brachyrhynchos] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_5.1_16674.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5.1_16674.t1 atgttcagggcgctatatgattataattctactattcctgaatacctgtcattcgaaaaaggcgacaaattcaccgccct cagagcgtctcatggggactggattcaagtggagaatggttttggtgaaatcggctacgttccaaggaactatgttgtcg aagaaaccgatgtaatgttctttctttactcatatttctatatgctaattaccaaatactggaattgtttcagtgattta caagctcaaaagaggacttccattaaaagagctgcacccccaccaccccaatcctctacagtcccacccacctcacagag aacctctcagcaccatgtatcccagccaagtagagcctctagttcacaacccaagcaggcttcacaaacagcacaaagag atgtacaaacatttcattctggctcacaaaaacatgtacaacagtacaaccaagtacatgtacaaagtcatcaatcccat tctcaagcaggaaacagaagctcacatgatttgagtagtgtaactgctggttcgacagccacaaggcacaaacaaccagg tcttcaaattacagatgtaccagcagaaactcacaataacgagcatttctctgtgacagacactgtagaaaacggctggg tgaatgttagtcatggatctagaggtacagcagatagagatagcaaggatactgtagattcaaaattaatggacagcaca aaggagaagagttgtgaggacagtgttttagatgaggcacaacttacatgcagagagagtaaagatgtccaacacaaaca ttccagtgatactgatgagcataatatacaacaatccagcttagtcacttctacggactctgtgagttcatctcaagtga tgtcacctgctcgatctataaagtccataccttccagtcctagcagactgttagcatcaccatcaatcataaatatgggc aacttaccaatgccgtcaaatttagcatctgagattatagaagaagtgcgtaaacatacaggacttagttatgacaagtc tgggttagcggtagaagttgtattaggacacattgccagtaggctaccacaaacagcagcgttaatggacaaaattatgg ctacagttacggagacaggaagcacatcagatgaggaggagagttatgatgctaagaggatcgaggaacttttcaccaag ctaacggcctgtaaggacgattctcagcagaggtcctgggccctgtatgaagatcaacaaaacatcctgactaaccttga agaattactgtcaatattagaaaatgccaagccctctatatgtcgtagggcagtgtccagaaacaattatgattccattc ataatcttgtacagtattaccagatggagtctagggttgtgttacgactgtccttgctgaaggtgtttggtgctatgtgt acactagaggcagctcttatatcacacttactctactccattctaccaatagagctagtcagtgaaatacagactcaata tgaagatgatccagtgagaatgtttgattaccagactagtcagcctaactctgtgatgaagttcatgcaggatctataca gtcagcagtcgacagcaaccctactgtacactaacgatgccaaagtattaatagatatcataatacgacaacttacagat ctacagtctggggatcagatgcgttcttcatacctaactcttaccaaacttctggttatgaactccgactactttgaaca tgaacatcggctagctgaactttgtgagagacttatggccatcaacaaagaggaagctgctccagagaacgataaggagg aggcaactctgattctagaggagtttaatagtcatttatag |
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Protein
| Protein ID | pfu_aug2.0_5.1_16674.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5.1_16674.t1 MFRALYDYNSTIPEYLSFEKGDKFTALRASHGDWIQVENGFGEIGYVPRNYVVEETDVMFFLYSYFYMLITKYWNCFSDL QAQKRTSIKRAAPPPPQSSTVPPTSQRTSQHHVSQPSRASSSQPKQASQTAQRDVQTFHSGSQKHVQQYNQVHVQSHQSH SQAGNRSSHDLSSVTAGSTATRHKQPGLQITDVPAETHNNEHFSVTDTVENGWVNVSHGSRGTADRDSKDTVDSKLMDST KEKSCEDSVLDEAQLTCRESKDVQHKHSSDTDEHNIQQSSLVTSTDSVSSSQVMSPARSIKSIPSSPSRLLASPSIINMG NLPMPSNLASEIIEEVRKHTGLSYDKSGLAVEVVLGHIASRLPQTAALMDKIMATVTETGSTSDEEESYDAKRIEELFTK LTACKDDSQQRSWALYEDQQNILTNLEELLSILENAKPSICRRAVSRNNYDSIHNLVQYYQMESRVVLRLSLLKVFGAMC TLEAALISHLLYSILPIELVSEIQTQYEDDPVRMFDYQTSQPNSVMKFMQDLYSQQSTATLLYTNDAKVLIDIIIRQLTD LQSGDQMRSSYLTLTKLLVMNSDYFEHEHRLAELCERLMAINKEEAAPENDKEEATLILEEFNSHL |
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