Gene
| Gene Model ID | pfu_aug2.0_5.1_16676 |
|---|---|
| Locus | scaffold5.1 : 395955 ... 412463 : + |
| To GenomeBrowser | scaffold5.1:395955..412463 |
| Genes list of scaffold | scaffold5.1 |
| Synonym | pfu_aug1.0_4300.1_16336 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_5.1_16676.t1 | 3 | 1 | VGLL4 | 214 | 313 | 2.8e-16 | 59.9 | 8.4e-18 | 6.2e-14 | 52.3 |
| pfu_aug2.0_5.1_16676.t1 | 3 | 2 | VGLL4 | 321 | 374 | 2.8e-16 | 59.9 | 1.3e-05 | 0.095 | 12.5 |
| pfu_aug2.0_5.1_16676.t1 | 3 | 3 | VGLL4 | 386 | 403 | 2.8e-16 | 59.9 | 0.26 | 1900.0 | -1.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_5.1_16676.t1 | gi|524878512|ref|XP_005095940.1| | PREDICTED: transcription cofactor vestigial-like protein 4-like [Aplysia californica] | 1.0e-15 |
| pfu_aug2.0_5.1_16676.t1 | gi|512929877|ref|XP_004931931.1| | PREDICTED: uncharacterized protein LOC101738724 isoform X1 [Bombyx mori] | 1.0e-14 |
| pfu_aug2.0_5.1_16676.t1 | gi|512929881|ref|XP_004931932.1| | PREDICTED: transcription cofactor vestigial-like protein 4 isoform X2 [Bombyx mori] | 5.0e-14 |
| pfu_aug2.0_5.1_16676.t1 | gi|573886475|ref|XP_006631087.1| | PREDICTED: transcription cofactor vestigial-like protein 4-like isoform X3 [Lepisosteus oculatus] | 3.0e-13 |
| pfu_aug2.0_5.1_16676.t1 | gi|573886471|ref|XP_006631085.1| | PREDICTED: transcription cofactor vestigial-like protein 4-like isoform X1 [Lepisosteus oculatus] | 4.0e-13 |
Transcript
| Transcript ID | pfu_aug2.0_5.1_16676.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5.1_16676.t1 atgatgtctatacttgggggaccacagattccgtatcccgaccctctgcacatgggacttctagggggaggtgcgctcgg acatagtgcattaggacttagtcacaattctttactctccgtacccctgtggcgtccgtcagtcacccatgcccccacaa tgtggtgctctacggctggttgtccatgtggcttatccagggccacgtataacgatttaatggacttttattccagtgta ccgtcttcccaaagcgtctggagaccgtggtattcaaaatccacctcaggcgattccatttataaacgaaactcgccaat cgattctcgagaatcgccgacgaaagaactgcccacaaaaatactcaaacacgagcgaatgaaggagcgacaggagctat cacagactctcagctatgacagggatcatttactcaaacttaaaagcagatgtacaggaacacagacgcaaatatcacat cttgaccatgacctttatatgaatggtgagcgcaggcatcatttggccttggccttggttgattaccatggacaccgtgg cccccttctgccacctcctccaccaccgccaccacctcctcacccaagccagcaggacccgagaggatcgccacccaaat acacacccatggatacccacgatgcaccgctcaatttgtcattatctagttcatccatatcgtcatcgtcgtcgtcatca gctttcagttcacaagtatcacgtccatcagtcatcacatgcgctccaaccggaaatgacagaccacatcactatggaaa cgcatcctcctcgccaccatcatcgttatcgccgtcatcccatcatgcaatatccccaaatcggcgggaagttatcacag aagtttgtgatcctgcaattgaagaacatttcagacgttctctaggtcgtagctatgactacatgtcaccaaaatcatcc cccaaggtcacgacacagttacctcctcctccacttcctccccagaaagcggcatcaccaactacagtttctatgacaac aaacggcaatcactccaatagtcctaatgtatctataacaggttcagtagatgagcattttgccaagtctttagggagta acacttggtcggccatcaaagccaaggagtctagccaggacatgttcacgggatctgtagacgatcattttgccaaagct ctcggtgatacgtggttacgaattaaagcagaaagagaaccgagccccacacaaagttccgggtcaaggtcacctccaca gaatatgtcaccaaggcaacaaaggcatgattcatcattgctgtccacctga |
|
Protein
| Protein ID | pfu_aug2.0_5.1_16676.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5.1_16676.t1 MMSILGGPQIPYPDPLHMGLLGGGALGHSALGLSHNSLLSVPLWRPSVTHAPTMWCSTAGCPCGLSRATYNDLMDFYSSV PSSQSVWRPWYSKSTSGDSIYKRNSPIDSRESPTKELPTKILKHERMKERQELSQTLSYDRDHLLKLKSRCTGTQTQISH LDHDLYMNGERRHHLALALVDYHGHRGPLLPPPPPPPPPPHPSQQDPRGSPPKYTPMDTHDAPLNLSLSSSSISSSSSSS AFSSQVSRPSVITCAPTGNDRPHHYGNASSSPPSSLSPSSHHAISPNRREVITEVCDPAIEEHFRRSLGRSYDYMSPKSS PKVTTQLPPPPLPPQKAASPTTVSMTTNGNHSNSPNVSITGSVDEHFAKSLGSNTWSAIKAKESSQDMFTGSVDDHFAKA LGDTWLRIKAEREPSPTQSSGSRSPPQNMSPRQQRHDSSLLST |
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