Gene
| Gene Model ID | pfu_aug2.0_5.1_16684 |
|---|---|
| Locus | scaffold5.1 : 545339 ... 549502 : - |
| To GenomeBrowser | scaffold5.1:545339..549502 |
| Genes list of scaffold | scaffold5.1 |
| Synonym | pfu_aug1.0_83555.1_34967 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_5.1_16684.t1 | 4 | 1 | Ank_2 | 108 | 153 | 7.6e-15 | 55.0 | 1.8e-07 | 0.00045 | 20.4 |
| pfu_aug2.0_5.1_16684.t1 | 6 | 1 | Ank | 111 | 133 | 1.0e-05 | 25.0 | 0.00046 | 1.1 | 9.1 |
| pfu_aug2.0_5.1_16684.t1 | 4 | 1 | Ank_4 | 113 | 146 | 1.0e-08 | 35.4 | 4.5e-05 | 0.11 | 13.0 |
| pfu_aug2.0_5.1_16684.t1 | 5 | 1 | Ank_5 | 117 | 143 | 2.0e-07 | 31.0 | 0.0012 | 2.9 | 8.2 |
| pfu_aug2.0_5.1_16684.t1 | 6 | 2 | Ank | 137 | 145 | 1.0e-05 | 25.0 | 1.5 | 3700.0 | -2.0 |
| pfu_aug2.0_5.1_16684.t1 | 4 | 2 | Ank_2 | 180 | 213 | 7.6e-15 | 55.0 | 0.087 | 220.0 | 2.2 |
| pfu_aug2.0_5.1_16684.t1 | 5 | 2 | Ank_5 | 189 | 201 | 2.0e-07 | 31.0 | 0.32 | 790.0 | 0.5 |
| pfu_aug2.0_5.1_16684.t1 | 4 | 2 | Ank_4 | 253 | 273 | 1.0e-08 | 35.4 | 0.13 | 330.0 | 1.9 |
| pfu_aug2.0_5.1_16684.t1 | 4 | 3 | Ank_2 | 256 | 312 | 7.6e-15 | 55.0 | 1.8e-05 | 0.045 | 14.1 |
| pfu_aug2.0_5.1_16684.t1 | 6 | 3 | Ank | 256 | 265 | 1.0e-05 | 25.0 | 0.78 | 1900.0 | -1.1 |
| pfu_aug2.0_5.1_16684.t1 | 5 | 3 | Ank_5 | 257 | 273 | 2.0e-07 | 31.0 | 0.065 | 160.0 | 2.7 |
| pfu_aug2.0_5.1_16684.t1 | 4 | 3 | Ank_4 | 270 | 308 | 1.0e-08 | 35.4 | 1.8e-05 | 0.043 | 14.3 |
| pfu_aug2.0_5.1_16684.t1 | 5 | 4 | Ank_5 | 280 | 308 | 2.0e-07 | 31.0 | 0.0016 | 4.0 | 7.8 |
| pfu_aug2.0_5.1_16684.t1 | 6 | 4 | Ank | 281 | 300 | 1.0e-05 | 25.0 | 0.022 | 55.0 | 3.8 |
| pfu_aug2.0_5.1_16684.t1 | 4 | 4 | Ank_2 | 282 | 365 | 7.6e-15 | 55.0 | 2.0e-09 | 4.9e-06 | 26.7 |
| pfu_aug2.0_5.1_16684.t1 | 6 | 5 | Ank | 323 | 337 | 1.0e-05 | 25.0 | 0.13 | 330.0 | 1.3 |
| pfu_aug2.0_5.1_16684.t1 | 4 | 4 | Ank_4 | 333 | 362 | 1.0e-08 | 35.4 | 0.0015 | 3.7 | 8.1 |
| pfu_aug2.0_5.1_16684.t1 | 5 | 5 | Ank_5 | 333 | 362 | 2.0e-07 | 31.0 | 0.00062 | 1.5 | 9.1 |
| pfu_aug2.0_5.1_16684.t1 | 6 | 6 | Ank | 342 | 362 | 1.0e-05 | 25.0 | 0.019 | 47.0 | 4.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_5.1_16684.t1 | gi|507931966|ref|XP_004677224.1| | PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein 7 [Condylura cristata] | 8.0e-06 |
| pfu_aug2.0_5.1_16684.t1 | gi|146184831|ref|XP_001030248.2| | 1.0e-05 |
Transcript
| Transcript ID | pfu_aug2.0_5.1_16684.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5.1_16684.t1 atgtcactgatgagggcttccccgatatttgcatgggatttaccctatgtcgattcactgttcatggttatgaattttgc tataccagaaccaatggggacaatatttgatcagttttgtgagagtggttatatttgctgtgaatttaaggattttcaat ccaattgctttggaagaatccttaatgaacgatttcattttctattaaagcaaagactaagagagacatgtcgcgacgga acagtggaggaaatcattcaaattgttggaggaaaggcaacttcctatcacaaggatggcatgatggctcaccaccttgt agccatttccgcacgggaggatatggaggacatgttggataaacttatacaagccggatgtgacgtcaatgccacaacgc ggtccaatgacgacacggtcttacatcttctcatagctaactgtccaatgaaaattgcttttccagccgccttgagaatt atggaatatgagccagatcttgatattagaaatgcaatcaaaatatggaaccttgcatctcaaaaaaacaacaaaaatga tagatacacgtccgacaatctacgcaccccgtatgacgtcgctatggctcagggattttacgaccttgcaaatgttcttg atggaagcaaaaccgctgaacaagctaaagattatttcatcaatcaaatggggaaaacatacggccaaaagttgatcaag gcggttctggatgataaagaggacgaggcaatagaatgtgtatacaccggggcagactgcaatatactaaacgaccatgg ctgtggggcgattcactacctcttgtcgagttactcccacaatcccctcaacgtcctcaccgccatgatggaatctaatg ctgacgtcaatctcagagattacgaaggagatacagttctaaatttgacaataaagaaaacagaactgagggatagtggt gaaatgtacaaaatagtggagaaactaatgggctggggagccgaccctacgtgcaatgatctggatggtaatgacgcaat cgctttagccaccaagaagaattacatagatattctgaagctgcttaggaccaagaggaaggcaatggtcacggtgcttc agttggtttttacaaantcatggcacatgctggcgctacaagaaatgcgacttgaaatggcttga |
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Protein
| Protein ID | pfu_aug2.0_5.1_16684.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5.1_16684.t1 MSLMRASPIFAWDLPYVDSLFMVMNFAIPEPMGTIFDQFCESGYICCEFKDFQSNCFGRILNERFHFLLKQRLRETCRDG TVEEIIQIVGGKATSYHKDGMMAHHLVAISAREDMEDMLDKLIQAGCDVNATTRSNDDTVLHLLIANCPMKIAFPAALRI MEYEPDLDIRNAIKIWNLASQKNNKNDRYTSDNLRTPYDVAMAQGFYDLANVLDGSKTAEQAKDYFINQMGKTYGQKLIK AVLDDKEDEAIECVYTGADCNILNDHGCGAIHYLLSSYSHNPLNVLTAMMESNADVNLRDYEGDTVLNLTIKKTELRDSG EMYKIVEKLMGWGADPTCNDLDGNDAIALATKKNYIDILKLLRTKRKAMVTVLQLVFTXSWHMLALQEMRLEMA |
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