Gene
| Gene Model ID | pfu_aug2.0_5.1_16689 |
|---|---|
| Locus | scaffold5.1 : 870583 ... 879580 : - |
| To GenomeBrowser | scaffold5.1:870583..879580 |
| Genes list of scaffold | scaffold5.1 |
| Synonym | pfu_aug1.0_1726.1_29829 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_5.1_16689.t1 | 1 | 1 | RD3 | 14 | 134 | 2.8e-35 | 120.7 | 5.2e-39 | 3.9e-35 | 120.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_5.1_16689.t1 | gi|291235828|ref|XP_002737849.1| | PREDICTED: protein RD3-like [Saccoglossus kowalevskii] | 7.00649e-45 |
| pfu_aug2.0_5.1_16689.t1 | gi|390350832|ref|XP_781231.2| | PREDICTED: protein RD3-like [Strongylocentrotus purpuratus] | 5.0e-40 |
| pfu_aug2.0_5.1_16689.t1 | gi|676494208|ref|XP_009066486.1| | hypothetical protein LOTGIDRAFT_97918, partial [Lottia gigantea] | 2.0e-34 |
| pfu_aug2.0_5.1_16689.t1 | gi|524893486|ref|XP_005103256.1| | PREDICTED: protein RD3-like [Aplysia californica] | 4.0e-32 |
| pfu_aug2.0_5.1_16689.t1 | gi|597784106|ref|XP_007255564.1| | PREDICTED: protein RD3 [Astyanax mexicanus] | 5.0e-26 |
Transcript
| Transcript ID | pfu_aug2.0_5.1_16689.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5.1_16689.t1 atgtatcctttaaagagcatttggaaaagtttagtgccagaaacacaaaaattaccaaacaagaatgagaaaacacaggt tgtagatacaattcttagtgaactggattaccatataaaagaactggatgcattagctcgtgaaaaagaacagcaagaaa ggaggaagaacacaggagtggactatagctggttaataagcacgcctccaaaaacatacgaaattcctcaactagagaga ttggagttagaagagctctgctacaaagtcaaaccagaggaaagcggtaaaatcttatcaatattccgtgatacactata caatgaaccccaaaccaaagatctgccaaaaatcatgaaatcctgcatatcgcaaatcatcgagcaaaggccaaaggagg agaccttgtctgactgggtcagcaagaaaactatgagtctgaccaagcttcgacatcacacccgaatttcaccgtcctcc attactgatcccgaggcccaagaaacatctagtcaaacgtctgtagattcctttgatatgaaatcctcacggacgaccag tatcagtcttcaggattaccatggtgatatggaatcgctacctgtgtga |
|
Protein
| Protein ID | pfu_aug2.0_5.1_16689.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5.1_16689.t1 MYPLKSIWKSLVPETQKLPNKNEKTQVVDTILSELDYHIKELDALAREKEQQERRKNTGVDYSWLISTPPKTYEIPQLER LELEELCYKVKPEESGKILSIFRDTLYNEPQTKDLPKIMKSCISQIIEQRPKEETLSDWVSKKTMSLTKLRHHTRISPSS ITDPEAQETSSQTSVDSFDMKSSRTTSISLQDYHGDMESLPV |
|