Gene
| Gene Model ID | pfu_aug2.0_50.1_00124 |
|---|---|
| Locus | scaffold50.1 : 78166 ... 103152 : + |
| To GenomeBrowser | scaffold50.1:78166..103152 |
| Genes list of scaffold | scaffold50.1 |
| Synonym | pfu_aug1.0_76703.1_13189 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| katanin p80 wd40 repeat-containing subunit b1 isoform x2 | GO:0015630 GO:0044430 GO:0044763 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_50.1_00124.t2 | 9 | 1 | WD40 | 10 | 45 | 0.0 | 242.8 | 6.2e-08 | 0.00013 | 21.6 |
| pfu_aug2.0_50.1_00124.t2 | 5 | 1 | eIF2A | 16 | 93 | 1.1e-12 | 48.0 | 0.0002 | 0.42 | 10.3 |
| pfu_aug2.0_50.1_00124.t2 | 9 | 2 | WD40 | 51 | 88 | 0.0 | 242.8 | 8.9e-09 | 1.9e-05 | 24.3 |
| pfu_aug2.0_50.1_00124.t2 | 9 | 3 | WD40 | 94 | 104 | 0.0 | 242.8 | 0.096 | 200.0 | 2.0 |
| pfu_aug2.0_50.1_00124.t2 | 5 | 2 | eIF2A | 94 | 154 | 1.1e-12 | 48.0 | 4.5e-05 | 0.095 | 12.4 |
| pfu_aug2.0_50.1_00124.t2 | 9 | 4 | WD40 | 110 | 146 | 0.0 | 242.8 | 1.6e-17 | 3.5e-14 | 52.0 |
| pfu_aug2.0_50.1_00124.t2 | 9 | 5 | WD40 | 150 | 188 | 0.0 | 242.8 | 3.0e-12 | 6.4e-09 | 35.3 |
| pfu_aug2.0_50.1_00124.t2 | 5 | 3 | eIF2A | 170 | 224 | 1.1e-12 | 48.0 | 0.0043 | 9.2 | 5.9 |
| pfu_aug2.0_50.1_00124.t2 | 9 | 6 | WD40 | 195 | 223 | 0.0 | 242.8 | 0.001 | 2.2 | 8.2 |
| pfu_aug2.0_50.1_00124.t2 | 9 | 7 | WD40 | 265 | 301 | 0.0 | 242.8 | 1.6e-17 | 3.5e-14 | 52.0 |
| pfu_aug2.0_50.1_00124.t2 | 5 | 4 | eIF2A | 271 | 309 | 1.1e-12 | 48.0 | 0.00059 | 1.3 | 8.7 |
| pfu_aug2.0_50.1_00124.t2 | 9 | 8 | WD40 | 305 | 343 | 0.0 | 242.8 | 3.0e-12 | 6.4e-09 | 35.3 |
| pfu_aug2.0_50.1_00124.t2 | 5 | 5 | eIF2A | 325 | 379 | 1.1e-12 | 48.0 | 0.0036 | 7.5 | 6.1 |
| pfu_aug2.0_50.1_00124.t2 | 9 | 9 | WD40 | 350 | 378 | 0.0 | 242.8 | 0.001 | 2.2 | 8.2 |
| pfu_aug2.0_50.1_00124.t2 | 1 | 1 | Katanin_con80 | 547 | 706 | 0.0 | 171.8 | 0.0 | 0.0 | 171.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_50.1_00124.t2 | gi|585665696|ref|XP_006816983.1| | PREDICTED: katanin p80 WD40 repeat-containing subunit B1-like [Saccoglossus kowalevskii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_50.1_00124.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_50.1_00124.t1 atgtctcagactaagcgatcatggaagctgcaggagtttgtagcacatgccaacaatgtgaattgtgtggcactgagtca gaagtctgccagagtgatggtgacagggggagaggataggaaagtcaacctatgggttgtaggcaagccaaactgtgtta tgagcctttgtgggcatacaacacctgtagaagccgttagatttggtcatgaggaagaaatggtggtggcaggttctctg tcaggtgctctcaaagtatgggatctggagcaagctaaaagttctatggattttaatgttaagttatgggacataaggaa gaaaggctgtatatacacatacaggggtcacaaaaatggtgtgaattgtgttcgatttagtccggacggtaaatggatcg cctcagctggagaagataatttagttaagatatgggacataactgctggtaaaattctgacagaccttacataccataga gggcctgttaatattgtagaattccatcctaatgagttactgcttgcctctggaagctcagacagaaccataaaattctg ggatttggagaattttgagatggtttcaaccacaaacaatgattcctccccaataaggaggatatttttccatcccgagg gatcctgtttatttagtggagttaaagacatgctcaaagtttattcgtgggaaccgtctaaatgttacgactctatccct atagcgtggggagaagtatgtgatatagctataggacaaaaccaactgttatgggacataaggaagaaaggctgtatata cacatacaggggtcacaaaaatggtgtgaattgtgttcgatttagtccggacggtaaatggattgcctcagctggagaag ataatttagttaagatatgggacattactgctggtaaaatcctgacagacctaacttaccatagagggcctgttaatatt gtagaattccatcctaacgagttactgcttgcctctggaagctcagacagaaccataaaattctgggatttggagaattt tgagatggtttcaaccacaaataatgattcctccccaataaggaggatatttttccatcctgagggatcctgtttattta gtggtgtaaaagacatgctcaaagtttattcgtgggaaccatctaaatgttacgactctatccctatagcgtggggagaa gtatgtgatatagctataggacaaaaccaactgataggtgcttctttatcacaaacaattgtttcaacatatgttgtgga tttaaagcgagtccagccgtttggtggggtgccacatcaggagggtggaaataacttgtcaagtaatatagatgatgaag tttttcccgatcctgaggaaattagtaaaacagattcagggaaaattagcagaaataaattcataacagagcgaccacca actcagtcatctagacaagccagatcccctgtgatgctgtgctcttgtgacacagagccagtcaaacaaccggccccatc ccgggctcctaaagcagtgtcaaaaccggcagccaaaccggtcagtaagccaccgtggaaaggaccaatagacgatgata aatctgctgtatctccagaggacttcttgccgaaatctgtaaacgctggtggggatacaaacagaccagtaacagagatg gaaaccttaacattactacgagggggtcataacgctatgtcccaggtcttatcacatcgcagtaaaaatctacaaatagt cagagccatgtggacctcaggcaataccaaaacggctgtagattctgcaataagtatgaaggatccatctgtgatagtag atttactaaatgttctcaatttaaaatcagggttatggagtttagatctgacgtccagtttactgcctcaagtcaaagat ctcctcgacagtaaatatgacagctatgtgatatcagcatgtgaagcattgaaaatcatgctacgaaactttggtcctgt cattaagtccaatctaacagcgccacctagtgttggagttgatatatcacgagaagaaagatacaagaaatgcacacagt gttacaaagaagtttctctgattcgtggtattatagcaactaaaggaggacagaatacgggaaaattaggacaattattc cgagaagttcaaattttactggcaagcatggattga |
|
| Transcript ID | pfu_aug2.0_50.1_00124.t2 |
| Definition | - |
>pfu_aug2.0_50.1_00124.t2 atgtctcagactaagcgatcatggaagctgcaggagtttgtagcacatgccaacaatgtgaattgtgtggcactgagtca gaagtctgccagagtgatggtgacagggggagaggataggaaagtcaacctatgggttgtaggcaagccaaactgtgtta tgagcctttgtgggcatacaacacctgtagaagccgttagatttggtcatgaggaagaaatggtggtggcaggttctctg tcaggtgctctcaaagtatgggatctggagcaagctaaaagttctatggattttaatgttaagttatgggacataaggaa gaaaggctgtatatacacatacaggggtcacaaaaatggtgtgaattgtgttcgatttagtccggacggtaaatggatcg cctcagctggagaagataatttagttaagatatgggacataactgctggtaaaattctgacagaccttacataccataga gggcctgttaatattgtagaattccatcctaatgagttactgcttgcctctggaagctcagacagaaccataaaattctg ggatttggagaattttgagatggtttcaaccacaaacaatgattcctccccaataaggaggatatttttccatcccgagg gatcctgtttatttagtggagttaaagacatgctcaaagtttattcgtgggaaccgtctaaatgttacgactctatccct atagcgtggggagaagtatgtgatatagctataggacaaaaccaactgttatgggacataaggaagaaaggctgtatata cacatacaggggtcacaaaaatggtgtgaattgtgttcgatttagtccggacggtaaatggattgcctcagctggagaag ataatttagttaagatatgggacattactgctggtaaaatcctgacagacctaacttaccatagagggcctgttaatatt gtagaattccatcctaacgagttactgcttgcctctggaagctcagacagaaccataaaattctgggatttggagaattt tgagatggtttcaaccacaaataatgattcctccccaataaggaggatatttttccatcctgagggatcctgtttattta gtggtgtaaaagacatgctcaaagtttattcgtgggaaccatctaaatgttacgactctatccctatagcgtggggagaa gtatgtgatatagctataggacaaaaccaactgataggtgcttctttatcacaaacaattgtttcaacatatgttgtgga tttaaagcgagtccagccgtttggtggggtgccacatcaggagggtggaaataacttgtcaagtagcagaaataaattca taacagagcgaccaccaactcagtcatctagacaagccagatcccctgtgatgctgtgctcttgtgacacagagccagtc aaacaaccggccccatcccgggctcctaaagcagtgtcaaaaccggcagccaaaccggtcagtaagccaccgtggaaagg accaatagacgatgataaatctgctgtatctccagaggacttcttgccgaaatctgtaaacgctggtggggatacaaaca gaccagtaacagagatggaaaccttaacattactacgagggggtcataacgctatgtcccaggtcttatcacatcgcagt aaaaatctacaaatagtcagagccatgtggacctcaggcaataccaaaacggctgtagattctgcaataagtatgaagga tccatctgtgatagtagatttactaaatgttctcaatttaaaatcagggttatggagtttagatctgacgtccagtttac tgcctcaagtcaaagatctcctcgacagtaaatatgacagctatgtgatatcagcatgtgaagcattgaaaatcatgcta cgaaactttggtcctgtcattaagtccaatctaacagcgccacctagtgttggagttgatatatcacgagaagaaagata caagaaatgcacacagtgttacaaagaagtttctctgattcgtggtattatagcaactaaaggaggacagaatacgggaa aattaggacaattattccgagaagttcaaattttactggcaagcatggattga |
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Protein
| Protein ID | pfu_aug2.0_50.1_00124.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_50.1_00124.t1 MSQTKRSWKLQEFVAHANNVNCVALSQKSARVMVTGGEDRKVNLWVVGKPNCVMSLCGHTTPVEAVRFGHEEEMVVAGSL SGALKVWDLEQAKSSMDFNVKLWDIRKKGCIYTYRGHKNGVNCVRFSPDGKWIASAGEDNLVKIWDITAGKILTDLTYHR GPVNIVEFHPNELLLASGSSDRTIKFWDLENFEMVSTTNNDSSPIRRIFFHPEGSCLFSGVKDMLKVYSWEPSKCYDSIP IAWGEVCDIAIGQNQLLWDIRKKGCIYTYRGHKNGVNCVRFSPDGKWIASAGEDNLVKIWDITAGKILTDLTYHRGPVNI VEFHPNELLLASGSSDRTIKFWDLENFEMVSTTNNDSSPIRRIFFHPEGSCLFSGVKDMLKVYSWEPSKCYDSIPIAWGE VCDIAIGQNQLIGASLSQTIVSTYVVDLKRVQPFGGVPHQEGGNNLSSNIDDEVFPDPEEISKTDSGKISRNKFITERPP TQSSRQARSPVMLCSCDTEPVKQPAPSRAPKAVSKPAAKPVSKPPWKGPIDDDKSAVSPEDFLPKSVNAGGDTNRPVTEM ETLTLLRGGHNAMSQVLSHRSKNLQIVRAMWTSGNTKTAVDSAISMKDPSVIVDLLNVLNLKSGLWSLDLTSSLLPQVKD LLDSKYDSYVISACEALKIMLRNFGPVIKSNLTAPPSVGVDISREERYKKCTQCYKEVSLIRGIIATKGGQNTGKLGQLF REVQILLASMD |
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| Protein ID | pfu_aug2.0_50.1_00124.t2 |
| Definition | - |
>pfu_aug2.0_50.1_00124.t2 MSQTKRSWKLQEFVAHANNVNCVALSQKSARVMVTGGEDRKVNLWVVGKPNCVMSLCGHTTPVEAVRFGHEEEMVVAGSL SGALKVWDLEQAKSSMDFNVKLWDIRKKGCIYTYRGHKNGVNCVRFSPDGKWIASAGEDNLVKIWDITAGKILTDLTYHR GPVNIVEFHPNELLLASGSSDRTIKFWDLENFEMVSTTNNDSSPIRRIFFHPEGSCLFSGVKDMLKVYSWEPSKCYDSIP IAWGEVCDIAIGQNQLLWDIRKKGCIYTYRGHKNGVNCVRFSPDGKWIASAGEDNLVKIWDITAGKILTDLTYHRGPVNI VEFHPNELLLASGSSDRTIKFWDLENFEMVSTTNNDSSPIRRIFFHPEGSCLFSGVKDMLKVYSWEPSKCYDSIPIAWGE VCDIAIGQNQLIGASLSQTIVSTYVVDLKRVQPFGGVPHQEGGNNLSSSRNKFITERPPTQSSRQARSPVMLCSCDTEPV KQPAPSRAPKAVSKPAAKPVSKPPWKGPIDDDKSAVSPEDFLPKSVNAGGDTNRPVTEMETLTLLRGGHNAMSQVLSHRS KNLQIVRAMWTSGNTKTAVDSAISMKDPSVIVDLLNVLNLKSGLWSLDLTSSLLPQVKDLLDSKYDSYVISACEALKIML RNFGPVIKSNLTAPPSVGVDISREERYKKCTQCYKEVSLIRGIIATKGGQNTGKLGQLFREVQILLASMD |
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