Gene
| Gene Model ID | pfu_aug2.0_50.1_00126 |
|---|---|
| Locus | scaffold50.1 : 120046 ... 123292 : + |
| To GenomeBrowser | scaffold50.1:120046..123292 |
| Genes list of scaffold | scaffold50.1 |
| Synonym | pfu_aug1.0_87656.1_42202 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_50.1_00126.t1 | 1 | 1 | AIG1 | 43 | 251 | 0.0 | 207.5 | 0.0 | 0.0 | 206.9 |
| pfu_aug2.0_50.1_00126.t1 | 1 | 1 | MMR_HSR1 | 43 | 142 | 2.7e-09 | 36.9 | 8.5e-12 | 9.7e-09 | 35.1 |
| pfu_aug2.0_50.1_00126.t1 | 1 | 1 | FeoB_N | 43 | 148 | 5.3e-06 | 25.7 | 8.1e-09 | 9.2e-06 | 25.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_50.1_00126.t1 | gi|558187835|ref|XP_006128776.1| | PREDICTED: GTPase IMAP family member 4 [Pelodiscus sinensis] | 0.0 |
| pfu_aug2.0_50.1_00126.t1 | gi|564244179|ref|XP_006278857.1| | PREDICTED: GTPase IMAP family member 7-like, partial [Alligator mississippiensis] | 0.0 |
| pfu_aug2.0_50.1_00126.t1 | gi|591362148|ref|XP_007055986.1| | PREDICTED: GTPase IMAP family member 4-like, partial [Chelonia mydas] | 0.0 |
| pfu_aug2.0_50.1_00126.t1 | gi|557323110|ref|XP_006034625.1| | PREDICTED: GTPase IMAP family member 7 [Alligator sinensis] | 0.0 |
| pfu_aug2.0_50.1_00126.t1 | gi|557323126|ref|XP_006034633.1| | PREDICTED: GTPase IMAP family member 4-like [Alligator sinensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_50.1_00126.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_50.1_00126.t1 atgtggatgttgcctagtgtgacactatcagggttaattgcatcgtttgatttgattacaatgctgatggcatttgagga agttgaagacttcgataaaagagtcccagttccgagtgaagaaatgcggattttgttgatcgggaagacgggagtgggta aaagtgcgattggaaacgcaatgctcgggaaaaattcctttgaatcaaaattgtccggacagacggtgacgaaagccatg tcctttgacagagctcggcggtatgggaaaaacctgttggtgatagatacaccgggtcttcatgacacgttatatccacg ggaaaaagtattgtctgaaattgcgaaatgttacgccgtctcctcgccaggtcttcacgccgtcatcatggtcatagagg cgggaagatttacggcggaggagcaacggacattaaatttctttcaaaacgcgtttggggagcaagtttttgagtatatg actgtaatattcacaggaaaagataaactagattccgagggtttgactgtaaaagaatatgtcgacacattggaagaaac tgcattacaggaattgttaaggaaagttgaaaataggtatcttttattcggaataaaaggcgacccggatgaaagagaac aagaagtgaaagatttactgattatgatcgaaaatatggtgaacaaaaatcaaggtaaaatgtacacaaatcaaatgtac gccagagccgaggaagaacttctaaaagtttgggaagaagaatcaaattttgaaaaagaaaaacgcacgaaagaagtgga cgataaaattgcagaaatgcgtaatattcacaagaaattaaaacaagatcgcaccgccctgttgtaccagagagaggaat ataagagaagaaatatcaggcttcttgaggaggaaatgggtgagaaatggcgagatttcagaagtcacgtgaggcgtcgt gtcgaaagcaaagagagattcagtgaaatgcgcttcttaaaaattcttgcaaatctgattcaagaaatgttcgtattatt tgttcatgatgccccccaacttactagaattgtaacagcaggtaacagtagagttgaactgtag |
|
Protein
| Protein ID | pfu_aug2.0_50.1_00126.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_50.1_00126.t1 MWMLPSVTLSGLIASFDLITMLMAFEEVEDFDKRVPVPSEEMRILLIGKTGVGKSAIGNAMLGKNSFESKLSGQTVTKAM SFDRARRYGKNLLVIDTPGLHDTLYPREKVLSEIAKCYAVSSPGLHAVIMVIEAGRFTAEEQRTLNFFQNAFGEQVFEYM TVIFTGKDKLDSEGLTVKEYVDTLEETALQELLRKVENRYLLFGIKGDPDEREQEVKDLLIMIENMVNKNQGKMYTNQMY ARAEEELLKVWEEESNFEKEKRTKEVDDKIAEMRNIHKKLKQDRTALLYQREEYKRRNIRLLEEEMGEKWRDFRSHVRRR VESKERFSEMRFLKILANLIQEMFVLFVHDAPQLTRIVTAGNSRVEL |
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